Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1138.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,083,852	+				+0.2
1,083,853	-				+1.3
1,083,853	-				-0.0
1,083,951	+				-0.4
1,084,161	+		Xcc-8004.1137.1	0.45	-1.7
1,084,257	+		Xcc-8004.1137.1	0.65	+0.0
1,084,314	+		Xcc-8004.1137.1	0.77	+0.7
1,084,589	+		Xcc-8004.1138.1	0.27	-0.8
1,084,589	+		Xcc-8004.1138.1	0.27	-1.6
1,084,590	-		Xcc-8004.1138.1	0.27	-0.1
1,084,590	-		Xcc-8004.1138.1	0.27	-1.2
1,084,794	-		Xcc-8004.1138.1	0.59	-0.3
1,084,972	+		Xcc-8004.1138.1	0.86	+1.5
1,084,972	+		Xcc-8004.1138.1	0.86	-1.8
1,084,972	+		Xcc-8004.1138.1	0.86	-1.4
1,084,972	+		Xcc-8004.1138.1	0.86	-0.1
1,084,973	-		Xcc-8004.1138.1	0.87	-1.5
1,084,973	-		Xcc-8004.1138.1	0.87	-1.5
1,085,063	-				-0.3
1,085,063	-				-0.1
1,085,063	-				+0.3
1,085,063	-				+1.4
1,085,063	-				+0.0
1,085,230	+				-0.4
1,085,230	+				-0.8
1,085,231	-				-0.1
1,085,231	-				-1.7
1,085,231	-				+0.6
1,085,231	-				-1.7
1,085,231	-				-0.2
1,085,355	+				-2.3
1,085,376	-				-2.7
1,085,421	+				+0.5
1,085,421	+				-0.6
1,085,422	-				-0.7
1,085,422	-				+1.3
1,085,422	-				-0.4
1,085,425	+				-0.0
1,085,425	+				-1.0
1,085,425	+				-1.4
1,085,426	-				-0.3
1,085,426	-				-0.8
1,085,426	-				-1.0
1,085,426	-				-1.8
1,085,483	+				+0.2
1,085,483	+				-0.5
1,085,483	+				-0.7
1,085,483	+				-1.3
1,085,484	-				-0.2
1,085,486	-				+1.2
1,085,486	-				+0.5
1,085,522	+				-0.3
1,085,543	+				+0.0
1,085,543	+				+1.6
1,085,544	-				+1.2
1,085,544	-				+0.0
1,085,544	-				+1.1
1,085,544	-				+0.2
1,085,562	+				-0.4
1,085,562	+				-0.3
1,085,562	+				-0.3
1,085,563	-				-0.4
1,085,582	+				-1.6
1,085,583	-				-0.5
1,085,583	-				-1.6
1,085,583	-				-0.3
1,085,599	-				-0.9
1,085,599	-				+1.4
1,085,599	-				+0.3
1,085,644	+		Xcc-8004.1144.1	0.25	+0.3
1,085,644	+		Xcc-8004.1144.1	0.25	-0.1
1,085,644	+		Xcc-8004.1144.1	0.25	-1.8
1,085,644	+		Xcc-8004.1144.1	0.25	-0.5
1,085,644	+		Xcc-8004.1144.1	0.25	+0.4
1,085,645	-		Xcc-8004.1144.1	0.25	+0.3
1,085,645	-		Xcc-8004.1144.1	0.25	-0.7
1,085,645	-		Xcc-8004.1144.1	0.25	-0.2
1,085,645	-		Xcc-8004.1144.1	0.25	+0.1
1,085,825	-		Xcc-8004.1144.1	0.86	-0.8
1,085,825	-		Xcc-8004.1144.1	0.86	+0.9
1,085,841	-				+0.4