Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1132.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,079,746	-		Xcc-8004.1130.1	0.87	-0.9
1,079,829	+				-0.6
1,079,830	-				-0.0
1,079,934	+				-0.6
1,079,935	-				-0.5
1,079,935	-				-2.1
1,079,975	+				+0.4
1,080,037	+				-0.5
1,080,038	-				+0.5
1,080,271	+				+0.0
1,080,271	+				-0.7
1,080,271	+				-2.4
1,080,272	-				+0.6
1,080,282	-				-1.9
1,080,309	+				-0.4
1,080,357	+				+0.7
1,080,357	+				+1.2
1,080,357	+				+0.6
1,080,358	-				+0.4
1,080,358	-				-0.3
1,080,392	-				+0.2
1,080,399	+				+0.5
1,080,403	+				-0.3
1,080,403	+				+0.5
1,080,403	+				+0.1
1,080,545	+				-0.3
1,080,546	-				-0.8
1,080,546	-				+1.4
1,080,549	+				+1.7
1,080,549	+				-0.0
1,080,550	-				+1.0
1,080,569	-				-0.3
1,080,684	-				-0.3
1,080,715	-				+0.6
1,080,721	+				-0.1
1,080,772	-				-1.1
1,080,957	+		Xcc-8004.1132.1	0.34	-0.2
1,080,957	+		Xcc-8004.1132.1	0.34	-1.2
1,080,957	+		Xcc-8004.1132.1	0.34	-0.8
1,081,432	+		Xcc-8004.1133.1	0.12	-1.8
1,081,433	-		Xcc-8004.1133.1	0.13	-0.8
1,081,694	+				-0.8
1,081,695	-				+0.6
1,081,698	+				-1.0
1,081,699	-				-0.7
1,081,699	-				-0.5
1,081,699	-				-0.0
1,081,833	+		Xcc-8004.1134.1	0.16	-1.3
1,081,834	-		Xcc-8004.1134.1	0.16	+0.0
1,081,834	-		Xcc-8004.1134.1	0.16	-0.4
1,081,834	-		Xcc-8004.1134.1	0.16	-2.8
1,081,834	-		Xcc-8004.1134.1	0.16	-1.7
1,081,936	-		Xcc-8004.1134.1	0.29	+1.7
1,081,936	-		Xcc-8004.1134.1	0.29	+0.0
1,082,136	-		Xcc-8004.1134.1	0.52	+0.7
1,082,136	-		Xcc-8004.1134.1	0.52	-1.8
1,082,259	+		Xcc-8004.1134.1	0.67	+0.1
1,082,259	+		Xcc-8004.1134.1	0.67	-0.1
1,082,259	+		Xcc-8004.1134.1	0.67	+1.2
1,082,259	+		Xcc-8004.1134.1	0.67	+0.1
1,082,260	-		Xcc-8004.1134.1	0.67	-0.1
1,082,260	-		Xcc-8004.1134.1	0.67	+0.9
1,082,277	+		Xcc-8004.1134.1	0.69	-0.3
1,082,277	+		Xcc-8004.1134.1	0.69	+0.3
1,082,277	+		Xcc-8004.1134.1	0.69	+0.2
1,082,280	+		Xcc-8004.1134.1	0.70	-0.3
1,082,281	-		Xcc-8004.1134.1	0.70	-0.8
1,082,302	-		Xcc-8004.1134.1	0.72	+0.7
1,082,323	-		Xcc-8004.1134.1	0.75	-1.2
1,082,323	-		Xcc-8004.1134.1	0.75	-2.5
1,082,415	+		Xcc-8004.1134.1	0.86	+0.5
1,082,416	-		Xcc-8004.1134.1	0.86	+0.7
1,082,416	-		Xcc-8004.1134.1	0.86	-1.1