Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1117.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1116.1 and Xcc-8004.1117.1 are separated by 36 nucleotidesXcc-8004.1117.1 and Xcc-8004.1118.1 are separated by 146 nucleotidesXcc-8004.1118.1 and Xcc-8004.1119.1 are separated by 101 nucleotidesXcc-8004.1119.1 and Xcc-8004.1120.1 overlap by 140 nucleotides Xcc-8004.1116.1: Xcc-8004.1116.1 - Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family, at 1,061,819 to 1,062,691 Xcc-8004.1116.1 Xcc-8004.1117.1: Xcc-8004.1117.1 - hypothetical protein, at 1,062,728 to 1,063,990 Xcc-8004.1117.1 Xcc-8004.1118.1: Xcc-8004.1118.1 - hypothetical protein, at 1,064,137 to 1,064,274 Xcc-8004.1118.1 Xcc-8004.1119.1: Xcc-8004.1119.1 - FIG01209687: hypothetical protein, at 1,064,376 to 1,064,621 Xcc-8004.1119.1 Xcc-8004.1120.1: Xcc-8004.1120.1 - putative; ORF located using Glimmer/Genemark, at 1,064,482 to 1,065,060 Xcc-8004.1120.1 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1061.752 kb on + strandat 1061.752 kb on + strandat 1061.973 kb on + strand, within Xcc-8004.1116.1at 1061.973 kb on + strand, within Xcc-8004.1116.1at 1061.974 kb on - strand, within Xcc-8004.1116.1at 1061.974 kb on - strand, within Xcc-8004.1116.1at 1062.004 kb on - strand, within Xcc-8004.1116.1at 1062.004 kb on - strand, within Xcc-8004.1116.1at 1062.102 kb on + strand, within Xcc-8004.1116.1at 1062.102 kb on + strand, within Xcc-8004.1116.1at 1062.103 kb on - strand, within Xcc-8004.1116.1at 1062.103 kb on - strand, within Xcc-8004.1116.1at 1062.103 kb on - strand, within Xcc-8004.1116.1at 1062.103 kb on - strand, within Xcc-8004.1116.1at 1062.153 kb on + strand, within Xcc-8004.1116.1at 1062.153 kb on + strand, within Xcc-8004.1116.1at 1062.153 kb on + strand, within Xcc-8004.1116.1at 1062.154 kb on - strand, within Xcc-8004.1116.1at 1062.154 kb on - strand, within Xcc-8004.1116.1at 1062.357 kb on + strand, within Xcc-8004.1116.1at 1062.358 kb on - strand, within Xcc-8004.1116.1at 1062.409 kb on - strand, within Xcc-8004.1116.1at 1062.426 kb on - strand, within Xcc-8004.1116.1at 1062.429 kb on - strand, within Xcc-8004.1116.1at 1062.429 kb on - strand, within Xcc-8004.1116.1at 1062.448 kb on - strand, within Xcc-8004.1116.1at 1062.469 kb on + strand, within Xcc-8004.1116.1at 1062.616 kb on - strandat 1062.803 kb on + strandat 1062.803 kb on + strandat 1062.804 kb on - strandat 1062.804 kb on - strandat 1062.807 kb on - strandat 1062.807 kb on - strandat 1062.807 kb on - strandat 1062.807 kb on - strandat 1062.807 kb on - strandat 1063.232 kb on + strand, within Xcc-8004.1117.1at 1063.232 kb on + strand, within Xcc-8004.1117.1at 1063.233 kb on - strand, within Xcc-8004.1117.1at 1063.245 kb on - strand, within Xcc-8004.1117.1at 1063.245 kb on - strand, within Xcc-8004.1117.1at 1063.271 kb on + strand, within Xcc-8004.1117.1at 1063.973 kb on + strandat 1063.973 kb on + strandat 1064.102 kb on + strandat 1064.102 kb on + strandat 1064.102 kb on + strandat 1064.103 kb on - strandat 1064.106 kb on + strandat 1064.107 kb on - strandat 1064.162 kb on - strand, within Xcc-8004.1118.1at 1064.162 kb on - strand, within Xcc-8004.1118.1at 1064.317 kb on + strandat 1064.339 kb on + strandat 1064.340 kb on - strandat 1064.340 kb on - strandat 1064.343 kb on + strandat 1064.362 kb on + strandat 1064.362 kb on + strandat 1064.363 kb on - strandat 1064.363 kb on - strandat 1064.363 kb on - strandat 1064.377 kb on + strandat 1064.378 kb on - strandat 1064.539 kb on + strandat 1064.539 kb on + strandat 1064.722 kb on - strand, within Xcc-8004.1120.1at 1064.782 kb on + strand, within Xcc-8004.1120.1at 1064.807 kb on + strand, within Xcc-8004.1120.1at 1064.807 kb on + strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.808 kb on - strand, within Xcc-8004.1120.1at 1064.838 kb on - strand, within Xcc-8004.1120.1at 1064.838 kb on - strand, within Xcc-8004.1120.1at 1064.936 kb on + strand, within Xcc-8004.1120.1at 1064.936 kb on + strand, within Xcc-8004.1120.1at 1064.936 kb on + strand, within Xcc-8004.1120.1at 1064.937 kb on - strand, within Xcc-8004.1120.1at 1064.968 kb on + strand, within Xcc-8004.1120.1at 1064.969 kb on - strand, within Xcc-8004.1120.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,061,752 + +0.2
1,061,752 + -0.1
1,061,973 + Xcc-8004.1116.1 0.18 +0.4
1,061,973 + Xcc-8004.1116.1 0.18 -0.1
1,061,974 - Xcc-8004.1116.1 0.18 -1.3
1,061,974 - Xcc-8004.1116.1 0.18 +1.1
1,062,004 - Xcc-8004.1116.1 0.21 +0.4
1,062,004 - Xcc-8004.1116.1 0.21 +0.2
1,062,102 + Xcc-8004.1116.1 0.32 -0.8
1,062,102 + Xcc-8004.1116.1 0.32 -0.1
1,062,103 - Xcc-8004.1116.1 0.33 -0.6
1,062,103 - Xcc-8004.1116.1 0.33 +0.3
1,062,103 - Xcc-8004.1116.1 0.33 +1.0
1,062,103 - Xcc-8004.1116.1 0.33 +0.1
1,062,153 + Xcc-8004.1116.1 0.38 +0.7
1,062,153 + Xcc-8004.1116.1 0.38 +0.3
1,062,153 + Xcc-8004.1116.1 0.38 -0.5
1,062,154 - Xcc-8004.1116.1 0.38 +0.2
1,062,154 - Xcc-8004.1116.1 0.38 -0.9
1,062,357 + Xcc-8004.1116.1 0.62 -1.2
1,062,358 - Xcc-8004.1116.1 0.62 +0.4
1,062,409 - Xcc-8004.1116.1 0.68 +0.4
1,062,426 - Xcc-8004.1116.1 0.70 -0.3
1,062,429 - Xcc-8004.1116.1 0.70 -1.8
1,062,429 - Xcc-8004.1116.1 0.70 +1.5
1,062,448 - Xcc-8004.1116.1 0.72 +0.0
1,062,469 + Xcc-8004.1116.1 0.74 +0.3
1,062,616 - -0.0
1,062,803 + -2.3
1,062,803 + -3.0
1,062,804 - -1.2
1,062,804 - -1.5
1,062,807 - -1.7
1,062,807 - -1.1
1,062,807 - -1.2
1,062,807 - -0.9
1,062,807 - -0.3
1,063,232 + Xcc-8004.1117.1 0.40 -2.0
1,063,232 + Xcc-8004.1117.1 0.40 -2.4
1,063,233 - Xcc-8004.1117.1 0.40 -1.1
1,063,245 - Xcc-8004.1117.1 0.41 -1.4
1,063,245 - Xcc-8004.1117.1 0.41 -0.6
1,063,271 + Xcc-8004.1117.1 0.43 -3.2
1,063,973 + -0.7
1,063,973 + -1.8
1,064,102 + -0.1
1,064,102 + -0.6
1,064,102 + +1.6
1,064,103 - -1.2
1,064,106 + +0.4
1,064,107 - -1.3
1,064,162 - Xcc-8004.1118.1 0.18 -0.2
1,064,162 - Xcc-8004.1118.1 0.18 -0.3
1,064,317 + -1.5
1,064,339 + +0.7
1,064,340 - +0.1
1,064,340 - -0.6
1,064,343 + +0.3
1,064,362 + -0.4
1,064,362 + +0.4
1,064,363 - -0.3
1,064,363 - -0.5
1,064,363 - +0.7
1,064,377 + -1.4
1,064,378 - +2.3
1,064,539 + +0.6
1,064,539 + +0.3
1,064,722 - Xcc-8004.1120.1 0.41 +0.8
1,064,782 + Xcc-8004.1120.1 0.52 -1.7
1,064,807 + Xcc-8004.1120.1 0.56 +0.2
1,064,807 + Xcc-8004.1120.1 0.56 +0.2
1,064,808 - Xcc-8004.1120.1 0.56 +0.7
1,064,808 - Xcc-8004.1120.1 0.56 +0.0
1,064,808 - Xcc-8004.1120.1 0.56 -3.3
1,064,808 - Xcc-8004.1120.1 0.56 -0.2
1,064,808 - Xcc-8004.1120.1 0.56 +0.2
1,064,838 - Xcc-8004.1120.1 0.61 -0.8
1,064,838 - Xcc-8004.1120.1 0.61 -0.1
1,064,936 + Xcc-8004.1120.1 0.78 +0.2
1,064,936 + Xcc-8004.1120.1 0.78 -0.3
1,064,936 + Xcc-8004.1120.1 0.78 +0.7
1,064,937 - Xcc-8004.1120.1 0.79 -0.6
1,064,968 + Xcc-8004.1120.1 0.84 -2.4
1,064,969 - Xcc-8004.1120.1 0.84 -0.3

Or see this region's nucleotide sequence