Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.106.1 and Xcc-8004.107.1 are separated by 105 nucleotides Xcc-8004.107.1 and Xcc-8004.108.1 are separated by 15 nucleotides
Xcc-8004.106.1: Xcc-8004.106.1 - Esterase/lipase, at 95,037 to 96,179
Xcc-8004.106.1
Xcc-8004.107.1: Xcc-8004.107.1 - AtsE, at 96,285 to 96,683
Xcc-8004.107.1
Xcc-8004.108.1: Xcc-8004.108.1 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 96,699 to 97,031
Xcc-8004.108.1
Position (kb) 96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 95.395 kb on + strand, within Xcc-8004.106.1 at 95.395 kb on + strand, within Xcc-8004.106.1 at 95.395 kb on + strand, within Xcc-8004.106.1 at 95.395 kb on + strand, within Xcc-8004.106.1 at 95.410 kb on + strand, within Xcc-8004.106.1 at 95.410 kb on + strand, within Xcc-8004.106.1 at 95.411 kb on - strand, within Xcc-8004.106.1 at 95.411 kb on - strand, within Xcc-8004.106.1 at 95.562 kb on + strand, within Xcc-8004.106.1 at 95.562 kb on + strand, within Xcc-8004.106.1 at 95.619 kb on + strand, within Xcc-8004.106.1 at 95.640 kb on + strand, within Xcc-8004.106.1 at 95.640 kb on + strand, within Xcc-8004.106.1 at 95.640 kb on + strand, within Xcc-8004.106.1 at 95.640 kb on + strand, within Xcc-8004.106.1 at 95.640 kb on + strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.641 kb on - strand, within Xcc-8004.106.1 at 95.778 kb on + strand, within Xcc-8004.106.1 at 95.827 kb on + strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.828 kb on - strand, within Xcc-8004.106.1 at 95.868 kb on + strand, within Xcc-8004.106.1 at 95.868 kb on + strand, within Xcc-8004.106.1 at 95.868 kb on + strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.869 kb on - strand, within Xcc-8004.106.1 at 95.871 kb on + strand, within Xcc-8004.106.1 at 95.871 kb on + strand, within Xcc-8004.106.1 at 95.872 kb on - strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.997 kb on + strand, within Xcc-8004.106.1 at 95.998 kb on - strand, within Xcc-8004.106.1 at 95.999 kb on + strand, within Xcc-8004.106.1 at 95.999 kb on + strand, within Xcc-8004.106.1 at 95.999 kb on + strand, within Xcc-8004.106.1 at 96.000 kb on - strand, within Xcc-8004.106.1 at 96.163 kb on + strand at 96.163 kb on + strand at 96.164 kb on - strand at 96.164 kb on - strand at 96.164 kb on - strand at 96.178 kb on - strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.211 kb on + strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.212 kb on - strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.225 kb on + strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.226 kb on - strand at 96.247 kb on + strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.248 kb on - strand at 96.356 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.534 kb on + strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.535 kb on - strand, within Xcc-8004.107.1 at 96.547 kb on + strand, within Xcc-8004.107.1 at 96.616 kb on + strand, within Xcc-8004.107.1 at 96.616 kb on + strand, within Xcc-8004.107.1 at 96.681 kb on + strand at 96.717 kb on + strand at 96.740 kb on + strand, within Xcc-8004.108.1 at 96.741 kb on - strand, within Xcc-8004.108.1 at 96.846 kb on + strand, within Xcc-8004.108.1 at 97.071 kb on + strand at 97.071 kb on + strand at 97.071 kb on + strand at 97.072 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.242 kb on + strand at 97.272 kb on + strand at 97.273 kb on - strand at 97.280 kb on + strand at 97.280 kb on + strand at 97.281 kb on - strand at 97.281 kb on - strand at 97.281 kb on - strand at 97.345 kb on - strand at 97.345 kb on - strand at 97.345 kb on - strand at 97.348 kb on - strand at 97.379 kb on - strand at 97.406 kb on + strand at 97.407 kb on - strand at 97.432 kb on + strand at 97.444 kb on + strand at 97.445 kb on - strand at 97.508 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.644 kb on - strand at 97.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 95,395 + Xcc-8004.106.1 0.31 -1.5 95,395 + Xcc-8004.106.1 0.31 +0.1 95,395 + Xcc-8004.106.1 0.31 +0.1 95,395 + Xcc-8004.106.1 0.31 +0.0 95,410 + Xcc-8004.106.1 0.33 +0.4 95,410 + Xcc-8004.106.1 0.33 -0.6 95,411 - Xcc-8004.106.1 0.33 +0.1 95,411 - Xcc-8004.106.1 0.33 +0.5 95,562 + Xcc-8004.106.1 0.46 -1.1 95,562 + Xcc-8004.106.1 0.46 -0.8 95,619 + Xcc-8004.106.1 0.51 -3.0 95,640 + Xcc-8004.106.1 0.53 -1.0 95,640 + Xcc-8004.106.1 0.53 +1.0 95,640 + Xcc-8004.106.1 0.53 -0.0 95,640 + Xcc-8004.106.1 0.53 -0.7 95,640 + Xcc-8004.106.1 0.53 +0.0 95,641 - Xcc-8004.106.1 0.53 +0.3 95,641 - Xcc-8004.106.1 0.53 +0.1 95,641 - Xcc-8004.106.1 0.53 -2.1 95,641 - Xcc-8004.106.1 0.53 +1.4 95,641 - Xcc-8004.106.1 0.53 +0.7 95,641 - Xcc-8004.106.1 0.53 -0.5 95,641 - Xcc-8004.106.1 0.53 +1.2 95,641 - Xcc-8004.106.1 0.53 -1.3 95,641 - Xcc-8004.106.1 0.53 -0.1 95,641 - Xcc-8004.106.1 0.53 +0.6 95,641 - Xcc-8004.106.1 0.53 -0.2 95,641 - Xcc-8004.106.1 0.53 -0.7 95,778 + Xcc-8004.106.1 0.65 +0.2 95,827 + Xcc-8004.106.1 0.69 +0.2 95,828 - Xcc-8004.106.1 0.69 +0.4 95,828 - Xcc-8004.106.1 0.69 -0.1 95,828 - Xcc-8004.106.1 0.69 +1.3 95,828 - Xcc-8004.106.1 0.69 +2.9 95,828 - Xcc-8004.106.1 0.69 -0.0 95,868 + Xcc-8004.106.1 0.73 +0.0 95,868 + Xcc-8004.106.1 0.73 +0.3 95,868 + Xcc-8004.106.1 0.73 -3.1 95,869 - Xcc-8004.106.1 0.73 +0.1 95,869 - Xcc-8004.106.1 0.73 +0.4 95,869 - Xcc-8004.106.1 0.73 +0.5 95,869 - Xcc-8004.106.1 0.73 -0.7 95,869 - Xcc-8004.106.1 0.73 -2.6 95,871 + Xcc-8004.106.1 0.73 +0.1 95,871 + Xcc-8004.106.1 0.73 -0.2 95,872 - Xcc-8004.106.1 0.73 -0.5 95,997 + Xcc-8004.106.1 0.84 +0.7 95,997 + Xcc-8004.106.1 0.84 -0.4 95,997 + Xcc-8004.106.1 0.84 -1.7 95,997 + Xcc-8004.106.1 0.84 -0.9 95,997 + Xcc-8004.106.1 0.84 -1.0 95,998 - Xcc-8004.106.1 0.84 +0.9 95,999 + Xcc-8004.106.1 0.84 +0.9 95,999 + Xcc-8004.106.1 0.84 -0.4 95,999 + Xcc-8004.106.1 0.84 +0.1 96,000 - Xcc-8004.106.1 0.84 +1.0 96,163 + +0.3 96,163 + +0.2 96,164 - +0.6 96,164 - -1.8 96,164 - +1.7 96,178 - +1.0 96,211 + +0.1 96,211 + +0.4 96,211 + -1.5 96,211 + +0.1 96,211 + -0.2 96,211 + +0.9 96,211 + -0.6 96,211 + -0.6 96,211 + -0.2 96,211 + -0.2 96,211 + -0.1 96,211 + -0.2 96,212 - -1.0 96,212 - +0.1 96,212 - -1.1 96,212 - +1.4 96,212 - +0.4 96,212 - +0.1 96,212 - -0.6 96,212 - +0.8 96,212 - -1.0 96,212 - +1.5 96,212 - +1.0 96,212 - +0.5 96,225 + +0.9 96,225 + +0.5 96,225 + -0.4 96,225 + +0.1 96,225 + -0.3 96,225 + -1.5 96,226 - +0.7 96,226 - +0.3 96,226 - +1.3 96,226 - +1.3 96,247 + +0.8 96,248 - -0.4 96,248 - -1.3 96,248 - -1.5 96,248 - -0.4 96,248 - -0.5 96,356 + Xcc-8004.107.1 0.18 -2.1 96,534 + Xcc-8004.107.1 0.62 -1.3 96,534 + Xcc-8004.107.1 0.62 +0.8 96,534 + Xcc-8004.107.1 0.62 -0.4 96,534 + Xcc-8004.107.1 0.62 -0.9 96,534 + Xcc-8004.107.1 0.62 -1.1 96,534 + Xcc-8004.107.1 0.62 -0.6 96,535 - Xcc-8004.107.1 0.63 +1.7 96,535 - Xcc-8004.107.1 0.63 +0.1 96,535 - Xcc-8004.107.1 0.63 -1.0 96,535 - Xcc-8004.107.1 0.63 +0.0 96,547 + Xcc-8004.107.1 0.66 -0.9 96,616 + Xcc-8004.107.1 0.83 -0.0 96,616 + Xcc-8004.107.1 0.83 -0.2 96,681 + +0.5 96,717 + +0.2 96,740 + Xcc-8004.108.1 0.12 +0.3 96,741 - Xcc-8004.108.1 0.13 -0.9 96,846 + Xcc-8004.108.1 0.44 +0.0 97,071 + +0.1 97,071 + -0.9 97,071 + +0.8 97,072 - -0.1 97,116 - +1.3 97,116 - +0.8 97,116 - -0.6 97,116 - -0.0 97,116 - +1.3 97,116 - -0.1 97,116 - -0.4 97,116 - +0.2 97,242 + -1.0 97,272 + -0.0 97,273 - -0.0 97,280 + -1.3 97,280 + -0.9 97,281 - +0.8 97,281 - -0.3 97,281 - +0.4 97,345 - -0.2 97,345 - -0.1 97,345 - -0.0 97,348 - -0.7 97,379 - +0.0 97,406 + -0.7 97,407 - +0.1 97,432 + +0.2 97,444 + +0.7 97,445 - -0.1 97,508 + +1.1 97,643 + -0.1 97,643 + +0.4 97,643 + -0.5 97,643 + +2.1 97,643 + +0.7 97,643 + +0.3 97,644 - +1.1 97,644 - +0.2
Or see this region's nucleotide sequence