Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1060.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,011,031	-		Xcc-8004.1059.1	0.46	-0.9
1,011,192	+		Xcc-8004.1059.1	0.56	-2.3
1,011,318	+		Xcc-8004.1059.1	0.63	-1.7
1,011,318	+		Xcc-8004.1059.1	0.63	-1.6
1,011,978	-				+0.3
1,012,027	+				-0.3
1,012,058	+				-0.5
1,012,059	-				-1.1
1,012,131	+		Xcc-8004.1060.1	0.13	-2.9
1,012,131	+		Xcc-8004.1060.1	0.13	-0.4
1,012,131	+		Xcc-8004.1060.1	0.13	+0.2
1,012,131	+		Xcc-8004.1060.1	0.13	-1.9
1,012,132	-		Xcc-8004.1060.1	0.13	-0.1
1,012,132	-		Xcc-8004.1060.1	0.13	-3.1
1,012,132	-		Xcc-8004.1060.1	0.13	-1.7
1,012,152	+		Xcc-8004.1060.1	0.15	-2.6
1,012,257	+		Xcc-8004.1060.1	0.26	-2.8
1,012,257	+		Xcc-8004.1060.1	0.26	-1.9
1,012,257	+		Xcc-8004.1060.1	0.26	-1.7
1,012,257	+		Xcc-8004.1060.1	0.26	-1.3
1,012,257	+		Xcc-8004.1060.1	0.26	-2.0
1,012,266	+		Xcc-8004.1060.1	0.26	-2.0
1,012,267	-		Xcc-8004.1060.1	0.27	-2.1
1,012,317	+		Xcc-8004.1060.1	0.32	-3.7
1,012,318	-		Xcc-8004.1060.1	0.32	-3.6
1,012,318	-		Xcc-8004.1060.1	0.32	-1.4
1,012,318	-		Xcc-8004.1060.1	0.32	-2.1
1,012,359	+		Xcc-8004.1060.1	0.36	-2.3
1,012,360	-		Xcc-8004.1060.1	0.36	-3.1
1,012,362	+		Xcc-8004.1060.1	0.36	-1.4
1,012,533	+		Xcc-8004.1060.1	0.53	-3.9
1,012,533	+		Xcc-8004.1060.1	0.53	-1.7
1,012,534	-		Xcc-8004.1060.1	0.53	-1.9
1,012,576	-		Xcc-8004.1060.1	0.57	-2.8
1,012,576	-		Xcc-8004.1060.1	0.57	-2.6
1,012,584	+		Xcc-8004.1060.1	0.58	-2.6
1,012,584	+		Xcc-8004.1060.1	0.58	-1.1
1,012,584	+		Xcc-8004.1060.1	0.58	-1.2
1,012,584	+		Xcc-8004.1060.1	0.58	-1.3
1,012,584	+		Xcc-8004.1060.1	0.58	-2.9
1,012,584	+		Xcc-8004.1060.1	0.58	-2.1
1,012,585	-		Xcc-8004.1060.1	0.58	-2.5
1,012,585	-		Xcc-8004.1060.1	0.58	-1.1
1,012,585	-		Xcc-8004.1060.1	0.58	-2.0
1,013,055	+				-2.9
1,013,055	+				-1.4
1,013,055	+				-0.5
1,013,056	-				-0.2
1,013,056	-				+0.5
1,013,056	-				+0.1
1,013,056	-				-0.3
1,013,056	-				+0.5
1,013,056	-				+1.1
1,013,056	-				+0.2
1,013,059	+				-2.3
1,013,059	+				-2.3
1,013,059	+				-1.0
1,013,059	+				-1.0
1,013,060	-				+1.0
1,013,060	-				+0.6
1,013,060	-				+0.4
1,013,060	-				-1.1
1,013,264	-				-0.4
1,013,298	-				+0.5
1,013,298	-				-0.9
1,013,300	+				-2.8
1,013,300	+				-2.7
1,013,300	+				-2.3
1,013,300	+				-0.9
1,013,300	+				-3.7
1,013,300	+				-1.9
1,013,301	-				-1.3
1,013,301	-				+0.2
1,013,301	-				-0.6
1,013,301	-				+1.3
1,013,301	-				-0.1
1,013,301	-				-0.1
1,013,301	-				+0.3
1,013,301	-				-0.3
1,013,304	+				+0.1
1,013,304	+				-1.5
1,013,304	+				-3.1
1,013,392	+				-1.7
1,013,393	-				-0.4
1,013,446	+				-1.3
1,013,446	+				-0.6
1,013,597	+				-0.4
1,013,598	-				-0.1
1,013,653	-				-1.1
1,013,653	-				+0.5
1,013,653	-				-0.0
1,013,653	-				-0.1
1,013,946	-		Xcc-8004.1061.1	0.18	-1.0
1,013,951	+		Xcc-8004.1061.1	0.18	+0.5
1,013,952	-		Xcc-8004.1061.1	0.18	+0.1