Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1059.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1057.1 and Xcc-8004.1058.1 are separated by 18 nucleotidesXcc-8004.1058.1 and Xcc-8004.1059.1 overlap by 17 nucleotidesXcc-8004.1059.1 and Xcc-8004.1060.1 are separated by 45 nucleotides Xcc-8004.1057.1: Xcc-8004.1057.1 - Threonine dehydratase (EC 4.3.1.19), at 1,008,799 to 1,009,974 Xcc-8004.1057.1 Xcc-8004.1058.1: Xcc-8004.1058.1 - acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data), at 1,009,993 to 1,010,250 Xcc-8004.1058.1 Xcc-8004.1059.1: Xcc-8004.1059.1 - Acetolactate synthase large subunit (EC 2.2.1.6), at 1,010,234 to 1,011,955 Xcc-8004.1059.1 Xcc-8004.1060.1: Xcc-8004.1060.1 - Ketol-acid reductoisomerase (EC 1.1.1.86), at 1,012,001 to 1,013,002 Xcc-8004.1060.1 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1009.309 kb on + strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.515 kb on - strand, within Xcc-8004.1057.1at 1009.515 kb on - strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.730 kb on - strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.793 kb on + strand, within Xcc-8004.1057.1at 1009.794 kb on - strand, within Xcc-8004.1057.1at 1009.813 kb on + strand, within Xcc-8004.1057.1at 1009.813 kb on + strand, within Xcc-8004.1057.1at 1009.814 kb on - strand, within Xcc-8004.1057.1at 1009.814 kb on - strand, within Xcc-8004.1057.1at 1009.814 kb on - strand, within Xcc-8004.1057.1at 1009.817 kb on + strand, within Xcc-8004.1057.1at 1009.817 kb on + strand, within Xcc-8004.1057.1at 1009.817 kb on + strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.877 kb on - strandat 1009.877 kb on - strandat 1009.877 kb on - strandat 1009.877 kb on - strandat 1009.877 kb on - strandat 1010.048 kb on + strand, within Xcc-8004.1058.1at 1010.048 kb on + strand, within Xcc-8004.1058.1at 1010.048 kb on + strand, within Xcc-8004.1058.1at 1010.049 kb on - strand, within Xcc-8004.1058.1at 1010.049 kb on - strand, within Xcc-8004.1058.1at 1010.450 kb on + strand, within Xcc-8004.1059.1at 1010.557 kb on + strand, within Xcc-8004.1059.1at 1010.862 kb on + strand, within Xcc-8004.1059.1at 1010.862 kb on + strand, within Xcc-8004.1059.1at 1010.862 kb on + strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.866 kb on + strand, within Xcc-8004.1059.1at 1010.866 kb on + strand, within Xcc-8004.1059.1at 1010.867 kb on - strand, within Xcc-8004.1059.1at 1010.887 kb on - strand, within Xcc-8004.1059.1at 1010.981 kb on + strand, within Xcc-8004.1059.1at 1010.981 kb on + strand, within Xcc-8004.1059.1at 1010.981 kb on + strand, within Xcc-8004.1059.1at 1010.982 kb on - strand, within Xcc-8004.1059.1at 1010.982 kb on - strand, within Xcc-8004.1059.1at 1010.982 kb on - strand, within Xcc-8004.1059.1at 1010.982 kb on - strand, within Xcc-8004.1059.1at 1011.031 kb on - strand, within Xcc-8004.1059.1at 1011.192 kb on + strand, within Xcc-8004.1059.1at 1011.318 kb on + strand, within Xcc-8004.1059.1at 1011.318 kb on + strand, within Xcc-8004.1059.1at 1011.978 kb on - strandat 1012.027 kb on + strandat 1012.058 kb on + strandat 1012.059 kb on - strandat 1012.131 kb on + strand, within Xcc-8004.1060.1at 1012.131 kb on + strand, within Xcc-8004.1060.1at 1012.131 kb on + strand, within Xcc-8004.1060.1at 1012.131 kb on + strand, within Xcc-8004.1060.1at 1012.132 kb on - strand, within Xcc-8004.1060.1at 1012.132 kb on - strand, within Xcc-8004.1060.1at 1012.132 kb on - strand, within Xcc-8004.1060.1at 1012.152 kb on + strand, within Xcc-8004.1060.1at 1012.257 kb on + strand, within Xcc-8004.1060.1at 1012.257 kb on + strand, within Xcc-8004.1060.1at 1012.257 kb on + strand, within Xcc-8004.1060.1at 1012.257 kb on + strand, within Xcc-8004.1060.1at 1012.257 kb on + strand, within Xcc-8004.1060.1at 1012.266 kb on + strand, within Xcc-8004.1060.1at 1012.267 kb on - strand, within Xcc-8004.1060.1at 1012.317 kb on + strand, within Xcc-8004.1060.1at 1012.318 kb on - strand, within Xcc-8004.1060.1at 1012.318 kb on - strand, within Xcc-8004.1060.1at 1012.318 kb on - strand, within Xcc-8004.1060.1at 1012.359 kb on + strand, within Xcc-8004.1060.1at 1012.360 kb on - strand, within Xcc-8004.1060.1at 1012.362 kb on + strand, within Xcc-8004.1060.1at 1012.533 kb on + strand, within Xcc-8004.1060.1at 1012.533 kb on + strand, within Xcc-8004.1060.1at 1012.534 kb on - strand, within Xcc-8004.1060.1at 1012.576 kb on - strand, within Xcc-8004.1060.1at 1012.576 kb on - strand, within Xcc-8004.1060.1at 1012.584 kb on + strand, within Xcc-8004.1060.1at 1012.584 kb on + strand, within Xcc-8004.1060.1at 1012.584 kb on + strand, within Xcc-8004.1060.1at 1012.584 kb on + strand, within Xcc-8004.1060.1at 1012.584 kb on + strand, within Xcc-8004.1060.1at 1012.584 kb on + strand, within Xcc-8004.1060.1at 1012.585 kb on - strand, within Xcc-8004.1060.1at 1012.585 kb on - strand, within Xcc-8004.1060.1at 1012.585 kb on - strand, within Xcc-8004.1060.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,009,309 + Xcc-8004.1057.1 0.43 -2.3
1,009,310 - Xcc-8004.1057.1 0.43 -1.3
1,009,310 - Xcc-8004.1057.1 0.43 -1.9
1,009,310 - Xcc-8004.1057.1 0.43 -1.9
1,009,514 + Xcc-8004.1057.1 0.61 -2.7
1,009,514 + Xcc-8004.1057.1 0.61 -2.8
1,009,514 + Xcc-8004.1057.1 0.61 -2.1
1,009,514 + Xcc-8004.1057.1 0.61 -1.1
1,009,515 - Xcc-8004.1057.1 0.61 -2.4
1,009,515 - Xcc-8004.1057.1 0.61 -1.6
1,009,729 + Xcc-8004.1057.1 0.79 -2.5
1,009,729 + Xcc-8004.1057.1 0.79 -1.9
1,009,729 + Xcc-8004.1057.1 0.79 -1.7
1,009,729 + Xcc-8004.1057.1 0.79 -2.3
1,009,729 + Xcc-8004.1057.1 0.79 -3.0
1,009,729 + Xcc-8004.1057.1 0.79 -2.3
1,009,730 - Xcc-8004.1057.1 0.79 -1.2
1,009,736 + Xcc-8004.1057.1 0.80 +0.0
1,009,736 + Xcc-8004.1057.1 0.80 -3.4
1,009,736 + Xcc-8004.1057.1 0.80 -1.2
1,009,736 + Xcc-8004.1057.1 0.80 -0.6
1,009,736 + Xcc-8004.1057.1 0.80 -2.2
1,009,736 + Xcc-8004.1057.1 0.80 -0.8
1,009,736 + Xcc-8004.1057.1 0.80 -0.7
1,009,736 + Xcc-8004.1057.1 0.80 -2.6
1,009,736 + Xcc-8004.1057.1 0.80 -2.4
1,009,736 + Xcc-8004.1057.1 0.80 -0.4
1,009,737 - Xcc-8004.1057.1 0.80 -2.4
1,009,737 - Xcc-8004.1057.1 0.80 -1.1
1,009,737 - Xcc-8004.1057.1 0.80 -0.2
1,009,793 + Xcc-8004.1057.1 0.85 -1.1
1,009,794 - Xcc-8004.1057.1 0.85 -1.2
1,009,813 + Xcc-8004.1057.1 0.86 -0.9
1,009,813 + Xcc-8004.1057.1 0.86 -0.1
1,009,814 - Xcc-8004.1057.1 0.86 -1.5
1,009,814 - Xcc-8004.1057.1 0.86 -2.5
1,009,814 - Xcc-8004.1057.1 0.86 -2.4
1,009,817 + Xcc-8004.1057.1 0.87 -2.9
1,009,817 + Xcc-8004.1057.1 0.87 -0.8
1,009,817 + Xcc-8004.1057.1 0.87 -0.3
1,009,818 - Xcc-8004.1057.1 0.87 -0.6
1,009,818 - Xcc-8004.1057.1 0.87 -1.1
1,009,818 - Xcc-8004.1057.1 0.87 -0.8
1,009,818 - Xcc-8004.1057.1 0.87 -1.7
1,009,877 - -2.2
1,009,877 - +0.3
1,009,877 - +0.7
1,009,877 - -0.9
1,009,877 - -2.2
1,010,048 + Xcc-8004.1058.1 0.21 -1.1
1,010,048 + Xcc-8004.1058.1 0.21 -1.1
1,010,048 + Xcc-8004.1058.1 0.21 -3.2
1,010,049 - Xcc-8004.1058.1 0.22 +0.4
1,010,049 - Xcc-8004.1058.1 0.22 -1.9
1,010,450 + Xcc-8004.1059.1 0.13 -3.0
1,010,557 + Xcc-8004.1059.1 0.19 +0.1
1,010,862 + Xcc-8004.1059.1 0.36 -2.9
1,010,862 + Xcc-8004.1059.1 0.36 -0.3
1,010,862 + Xcc-8004.1059.1 0.36 -1.9
1,010,863 - Xcc-8004.1059.1 0.37 -3.7
1,010,863 - Xcc-8004.1059.1 0.37 -2.5
1,010,863 - Xcc-8004.1059.1 0.37 -2.9
1,010,863 - Xcc-8004.1059.1 0.37 -0.5
1,010,866 + Xcc-8004.1059.1 0.37 +0.1
1,010,866 + Xcc-8004.1059.1 0.37 -1.5
1,010,867 - Xcc-8004.1059.1 0.37 -1.6
1,010,887 - Xcc-8004.1059.1 0.38 -2.0
1,010,981 + Xcc-8004.1059.1 0.43 -1.9
1,010,981 + Xcc-8004.1059.1 0.43 -1.0
1,010,981 + Xcc-8004.1059.1 0.43 -1.6
1,010,982 - Xcc-8004.1059.1 0.43 -1.4
1,010,982 - Xcc-8004.1059.1 0.43 -2.3
1,010,982 - Xcc-8004.1059.1 0.43 -3.2
1,010,982 - Xcc-8004.1059.1 0.43 -1.6
1,011,031 - Xcc-8004.1059.1 0.46 -0.9
1,011,192 + Xcc-8004.1059.1 0.56 -2.3
1,011,318 + Xcc-8004.1059.1 0.63 -1.7
1,011,318 + Xcc-8004.1059.1 0.63 -1.6
1,011,978 - +0.3
1,012,027 + -0.3
1,012,058 + -0.5
1,012,059 - -1.1
1,012,131 + Xcc-8004.1060.1 0.13 -2.9
1,012,131 + Xcc-8004.1060.1 0.13 -0.4
1,012,131 + Xcc-8004.1060.1 0.13 +0.2
1,012,131 + Xcc-8004.1060.1 0.13 -1.9
1,012,132 - Xcc-8004.1060.1 0.13 -0.1
1,012,132 - Xcc-8004.1060.1 0.13 -3.1
1,012,132 - Xcc-8004.1060.1 0.13 -1.7
1,012,152 + Xcc-8004.1060.1 0.15 -2.6
1,012,257 + Xcc-8004.1060.1 0.26 -2.8
1,012,257 + Xcc-8004.1060.1 0.26 -1.9
1,012,257 + Xcc-8004.1060.1 0.26 -1.7
1,012,257 + Xcc-8004.1060.1 0.26 -1.3
1,012,257 + Xcc-8004.1060.1 0.26 -2.0
1,012,266 + Xcc-8004.1060.1 0.26 -2.0
1,012,267 - Xcc-8004.1060.1 0.27 -2.1
1,012,317 + Xcc-8004.1060.1 0.32 -3.7
1,012,318 - Xcc-8004.1060.1 0.32 -3.6
1,012,318 - Xcc-8004.1060.1 0.32 -1.4
1,012,318 - Xcc-8004.1060.1 0.32 -2.1
1,012,359 + Xcc-8004.1060.1 0.36 -2.3
1,012,360 - Xcc-8004.1060.1 0.36 -3.1
1,012,362 + Xcc-8004.1060.1 0.36 -1.4
1,012,533 + Xcc-8004.1060.1 0.53 -3.9
1,012,533 + Xcc-8004.1060.1 0.53 -1.7
1,012,534 - Xcc-8004.1060.1 0.53 -1.9
1,012,576 - Xcc-8004.1060.1 0.57 -2.8
1,012,576 - Xcc-8004.1060.1 0.57 -2.6
1,012,584 + Xcc-8004.1060.1 0.58 -2.6
1,012,584 + Xcc-8004.1060.1 0.58 -1.1
1,012,584 + Xcc-8004.1060.1 0.58 -1.2
1,012,584 + Xcc-8004.1060.1 0.58 -1.3
1,012,584 + Xcc-8004.1060.1 0.58 -2.9
1,012,584 + Xcc-8004.1060.1 0.58 -2.1
1,012,585 - Xcc-8004.1060.1 0.58 -2.5
1,012,585 - Xcc-8004.1060.1 0.58 -1.1
1,012,585 - Xcc-8004.1060.1 0.58 -2.0

Or see this region's nucleotide sequence