Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1057.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1056.1 and Xcc-8004.1057.1 overlap by 4 nucleotidesXcc-8004.1057.1 and Xcc-8004.1058.1 are separated by 18 nucleotidesXcc-8004.1058.1 and Xcc-8004.1059.1 overlap by 17 nucleotides Xcc-8004.1056.1: Xcc-8004.1056.1 - 2-isopropylmalate synthase (EC 2.3.3.13), at 1,007,240 to 1,008,802 Xcc-8004.1056.1 Xcc-8004.1057.1: Xcc-8004.1057.1 - Threonine dehydratase (EC 4.3.1.19), at 1,008,799 to 1,009,974 Xcc-8004.1057.1 Xcc-8004.1058.1: Xcc-8004.1058.1 - acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data), at 1,009,993 to 1,010,250 Xcc-8004.1058.1 Xcc-8004.1059.1: Xcc-8004.1059.1 - Acetolactate synthase large subunit (EC 2.2.1.6), at 1,010,234 to 1,011,955 Xcc-8004.1059.1 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -3 -2 -1 0 1at 1007.850 kb on + strand, within Xcc-8004.1056.1at 1007.851 kb on - strand, within Xcc-8004.1056.1at 1007.995 kb on + strand, within Xcc-8004.1056.1at 1008.018 kb on + strand, within Xcc-8004.1056.1at 1008.387 kb on + strand, within Xcc-8004.1056.1at 1008.388 kb on - strand, within Xcc-8004.1056.1at 1008.817 kb on + strandat 1008.817 kb on + strandat 1008.868 kb on - strandat 1008.922 kb on - strand, within Xcc-8004.1057.1at 1008.996 kb on + strand, within Xcc-8004.1057.1at 1008.999 kb on + strand, within Xcc-8004.1057.1at 1008.999 kb on + strand, within Xcc-8004.1057.1at 1009.000 kb on - strand, within Xcc-8004.1057.1at 1009.023 kb on + strand, within Xcc-8004.1057.1at 1009.023 kb on + strand, within Xcc-8004.1057.1at 1009.023 kb on + strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.024 kb on - strand, within Xcc-8004.1057.1at 1009.309 kb on + strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.310 kb on - strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.514 kb on + strand, within Xcc-8004.1057.1at 1009.515 kb on - strand, within Xcc-8004.1057.1at 1009.515 kb on - strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.729 kb on + strand, within Xcc-8004.1057.1at 1009.730 kb on - strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.736 kb on + strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.737 kb on - strand, within Xcc-8004.1057.1at 1009.793 kb on + strand, within Xcc-8004.1057.1at 1009.794 kb on - strand, within Xcc-8004.1057.1at 1009.813 kb on + strand, within Xcc-8004.1057.1at 1009.813 kb on + strand, within Xcc-8004.1057.1at 1009.814 kb on - strand, within Xcc-8004.1057.1at 1009.814 kb on - strand, within Xcc-8004.1057.1at 1009.814 kb on - strand, within Xcc-8004.1057.1at 1009.817 kb on + strand, within Xcc-8004.1057.1at 1009.817 kb on + strand, within Xcc-8004.1057.1at 1009.817 kb on + strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.818 kb on - strand, within Xcc-8004.1057.1at 1009.877 kb on - strandat 1009.877 kb on - strandat 1009.877 kb on - strandat 1009.877 kb on - strandat 1009.877 kb on - strandat 1010.048 kb on + strand, within Xcc-8004.1058.1at 1010.048 kb on + strand, within Xcc-8004.1058.1at 1010.048 kb on + strand, within Xcc-8004.1058.1at 1010.049 kb on - strand, within Xcc-8004.1058.1at 1010.049 kb on - strand, within Xcc-8004.1058.1at 1010.450 kb on + strand, within Xcc-8004.1059.1at 1010.557 kb on + strand, within Xcc-8004.1059.1at 1010.862 kb on + strand, within Xcc-8004.1059.1at 1010.862 kb on + strand, within Xcc-8004.1059.1at 1010.862 kb on + strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.863 kb on - strand, within Xcc-8004.1059.1at 1010.866 kb on + strand, within Xcc-8004.1059.1at 1010.866 kb on + strand, within Xcc-8004.1059.1at 1010.867 kb on - strand, within Xcc-8004.1059.1at 1010.887 kb on - strand, within Xcc-8004.1059.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
1,007,850 + Xcc-8004.1056.1 0.39 -2.1
1,007,851 - Xcc-8004.1056.1 0.39 -1.1
1,007,995 + Xcc-8004.1056.1 0.48 -3.2
1,008,018 + Xcc-8004.1056.1 0.50 -2.5
1,008,387 + Xcc-8004.1056.1 0.73 -2.2
1,008,388 - Xcc-8004.1056.1 0.73 -1.5
1,008,817 + -1.9
1,008,817 + -2.3
1,008,868 - -2.3
1,008,922 - Xcc-8004.1057.1 0.10 -0.6
1,008,996 + Xcc-8004.1057.1 0.17 -0.6
1,008,999 + Xcc-8004.1057.1 0.17 -1.9
1,008,999 + Xcc-8004.1057.1 0.17 -0.9
1,009,000 - Xcc-8004.1057.1 0.17 -1.2
1,009,023 + Xcc-8004.1057.1 0.19 -1.2
1,009,023 + Xcc-8004.1057.1 0.19 -0.7
1,009,023 + Xcc-8004.1057.1 0.19 -1.9
1,009,024 - Xcc-8004.1057.1 0.19 -0.9
1,009,024 - Xcc-8004.1057.1 0.19 -0.9
1,009,024 - Xcc-8004.1057.1 0.19 -1.1
1,009,024 - Xcc-8004.1057.1 0.19 -0.1
1,009,024 - Xcc-8004.1057.1 0.19 -0.3
1,009,309 + Xcc-8004.1057.1 0.43 -2.3
1,009,310 - Xcc-8004.1057.1 0.43 -1.3
1,009,310 - Xcc-8004.1057.1 0.43 -1.9
1,009,310 - Xcc-8004.1057.1 0.43 -1.9
1,009,514 + Xcc-8004.1057.1 0.61 -2.7
1,009,514 + Xcc-8004.1057.1 0.61 -2.8
1,009,514 + Xcc-8004.1057.1 0.61 -2.1
1,009,514 + Xcc-8004.1057.1 0.61 -1.1
1,009,515 - Xcc-8004.1057.1 0.61 -2.4
1,009,515 - Xcc-8004.1057.1 0.61 -1.6
1,009,729 + Xcc-8004.1057.1 0.79 -2.5
1,009,729 + Xcc-8004.1057.1 0.79 -1.9
1,009,729 + Xcc-8004.1057.1 0.79 -1.7
1,009,729 + Xcc-8004.1057.1 0.79 -2.3
1,009,729 + Xcc-8004.1057.1 0.79 -3.0
1,009,729 + Xcc-8004.1057.1 0.79 -2.3
1,009,730 - Xcc-8004.1057.1 0.79 -1.2
1,009,736 + Xcc-8004.1057.1 0.80 +0.0
1,009,736 + Xcc-8004.1057.1 0.80 -3.4
1,009,736 + Xcc-8004.1057.1 0.80 -1.2
1,009,736 + Xcc-8004.1057.1 0.80 -0.6
1,009,736 + Xcc-8004.1057.1 0.80 -2.2
1,009,736 + Xcc-8004.1057.1 0.80 -0.8
1,009,736 + Xcc-8004.1057.1 0.80 -0.7
1,009,736 + Xcc-8004.1057.1 0.80 -2.6
1,009,736 + Xcc-8004.1057.1 0.80 -2.4
1,009,736 + Xcc-8004.1057.1 0.80 -0.4
1,009,737 - Xcc-8004.1057.1 0.80 -2.4
1,009,737 - Xcc-8004.1057.1 0.80 -1.1
1,009,737 - Xcc-8004.1057.1 0.80 -0.2
1,009,793 + Xcc-8004.1057.1 0.85 -1.1
1,009,794 - Xcc-8004.1057.1 0.85 -1.2
1,009,813 + Xcc-8004.1057.1 0.86 -0.9
1,009,813 + Xcc-8004.1057.1 0.86 -0.1
1,009,814 - Xcc-8004.1057.1 0.86 -1.5
1,009,814 - Xcc-8004.1057.1 0.86 -2.5
1,009,814 - Xcc-8004.1057.1 0.86 -2.4
1,009,817 + Xcc-8004.1057.1 0.87 -2.9
1,009,817 + Xcc-8004.1057.1 0.87 -0.8
1,009,817 + Xcc-8004.1057.1 0.87 -0.3
1,009,818 - Xcc-8004.1057.1 0.87 -0.6
1,009,818 - Xcc-8004.1057.1 0.87 -1.1
1,009,818 - Xcc-8004.1057.1 0.87 -0.8
1,009,818 - Xcc-8004.1057.1 0.87 -1.7
1,009,877 - -2.2
1,009,877 - +0.3
1,009,877 - +0.7
1,009,877 - -0.9
1,009,877 - -2.2
1,010,048 + Xcc-8004.1058.1 0.21 -1.1
1,010,048 + Xcc-8004.1058.1 0.21 -1.1
1,010,048 + Xcc-8004.1058.1 0.21 -3.2
1,010,049 - Xcc-8004.1058.1 0.22 +0.4
1,010,049 - Xcc-8004.1058.1 0.22 -1.9
1,010,450 + Xcc-8004.1059.1 0.13 -3.0
1,010,557 + Xcc-8004.1059.1 0.19 +0.1
1,010,862 + Xcc-8004.1059.1 0.36 -2.9
1,010,862 + Xcc-8004.1059.1 0.36 -0.3
1,010,862 + Xcc-8004.1059.1 0.36 -1.9
1,010,863 - Xcc-8004.1059.1 0.37 -3.7
1,010,863 - Xcc-8004.1059.1 0.37 -2.5
1,010,863 - Xcc-8004.1059.1 0.37 -2.9
1,010,863 - Xcc-8004.1059.1 0.37 -0.5
1,010,866 + Xcc-8004.1059.1 0.37 +0.1
1,010,866 + Xcc-8004.1059.1 0.37 -1.5
1,010,867 - Xcc-8004.1059.1 0.37 -1.6
1,010,887 - Xcc-8004.1059.1 0.38 -2.0

Or see this region's nucleotide sequence