Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1050.1 and Xcc-8004.1052.1 are separated by 32 nucleotides Xcc-8004.1052.1 and Xcc-8004.1053.1 overlap by 29 nucleotides Xcc-8004.1053.1 and Xcc-8004.1055.1 are separated by 236 nucleotides
Xcc-8004.1050.1: Xcc-8004.1050.1 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 1,003,520 to 1,004,269
Xcc-8004.1050.1
Xcc-8004.1052.1: Xcc-8004.1052.1 - hypothetical protein, at 1,004,302 to 1,005,051
Xcc-8004.1052.1
Xcc-8004.1053.1: Xcc-8004.1053.1 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 1,005,023 to 1,006,162
Xcc-8004.1053.1
Xcc-8004.1055.1: Xcc-8004.1055.1 - hypothetical protein, at 1,006,399 to 1,007,040
Xcc-8004.1055.1
Position (kb) 1005
1006
1007 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1004.121 kb on - strand, within Xcc-8004.1050.1 at 1004.274 kb on + strand at 1004.274 kb on + strand at 1004.275 kb on - strand at 1004.347 kb on + strand at 1004.347 kb on + strand at 1004.572 kb on - strand, within Xcc-8004.1052.1 at 1004.616 kb on + strand, within Xcc-8004.1052.1 at 1004.809 kb on + strand, within Xcc-8004.1052.1 at 1004.810 kb on - strand, within Xcc-8004.1052.1 at 1004.858 kb on + strand, within Xcc-8004.1052.1 at 1004.859 kb on - strand, within Xcc-8004.1052.1 at 1004.859 kb on - strand, within Xcc-8004.1052.1 at 1004.987 kb on - strand at 1005.230 kb on + strand, within Xcc-8004.1053.1 at 1005.240 kb on - strand, within Xcc-8004.1053.1 at 1005.510 kb on - strand, within Xcc-8004.1053.1 at 1005.564 kb on - strand, within Xcc-8004.1053.1 at 1005.578 kb on + strand, within Xcc-8004.1053.1 at 1005.579 kb on - strand, within Xcc-8004.1053.1 at 1005.749 kb on - strand, within Xcc-8004.1053.1 at 1005.752 kb on + strand, within Xcc-8004.1053.1 at 1005.752 kb on + strand, within Xcc-8004.1053.1 at 1005.752 kb on + strand, within Xcc-8004.1053.1 at 1005.752 kb on + strand, within Xcc-8004.1053.1 at 1005.753 kb on - strand, within Xcc-8004.1053.1 at 1005.753 kb on - strand, within Xcc-8004.1053.1 at 1005.860 kb on - strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.917 kb on + strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1005.918 kb on - strand, within Xcc-8004.1053.1 at 1006.010 kb on + strand, within Xcc-8004.1053.1 at 1006.347 kb on + strand at 1006.348 kb on - strand at 1006.348 kb on - strand at 1006.359 kb on + strand at 1006.359 kb on + strand at 1006.360 kb on - strand at 1006.360 kb on - strand at 1006.571 kb on + strand, within Xcc-8004.1055.1 at 1006.572 kb on - strand, within Xcc-8004.1055.1 at 1006.572 kb on - strand, within Xcc-8004.1055.1 at 1006.588 kb on - strand, within Xcc-8004.1055.1 at 1006.652 kb on + strand, within Xcc-8004.1055.1 at 1006.670 kb on + strand, within Xcc-8004.1055.1 at 1006.671 kb on - strand, within Xcc-8004.1055.1 at 1006.671 kb on - strand, within Xcc-8004.1055.1 at 1006.671 kb on - strand, within Xcc-8004.1055.1 at 1006.674 kb on + strand, within Xcc-8004.1055.1 at 1006.747 kb on - strand, within Xcc-8004.1055.1 at 1006.771 kb on - strand, within Xcc-8004.1055.1 at 1006.956 kb on - strand, within Xcc-8004.1055.1 at 1006.956 kb on - strand, within Xcc-8004.1055.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 1,004,121 - Xcc-8004.1050.1 0.80 -2.2 1,004,274 + +1.1 1,004,274 + -0.6 1,004,275 - -0.2 1,004,347 + -0.1 1,004,347 + -0.7 1,004,572 - Xcc-8004.1052.1 0.36 +0.3 1,004,616 + Xcc-8004.1052.1 0.42 -2.1 1,004,809 + Xcc-8004.1052.1 0.68 -0.9 1,004,810 - Xcc-8004.1052.1 0.68 -0.1 1,004,858 + Xcc-8004.1052.1 0.74 -2.2 1,004,859 - Xcc-8004.1052.1 0.74 +0.3 1,004,859 - Xcc-8004.1052.1 0.74 +0.8 1,004,987 - -0.1 1,005,230 + Xcc-8004.1053.1 0.18 -0.6 1,005,240 - Xcc-8004.1053.1 0.19 -1.3 1,005,510 - Xcc-8004.1053.1 0.43 -1.4 1,005,564 - Xcc-8004.1053.1 0.47 -2.5 1,005,578 + Xcc-8004.1053.1 0.49 -4.0 1,005,579 - Xcc-8004.1053.1 0.49 -1.5 1,005,749 - Xcc-8004.1053.1 0.64 -2.6 1,005,752 + Xcc-8004.1053.1 0.64 -1.4 1,005,752 + Xcc-8004.1053.1 0.64 -1.3 1,005,752 + Xcc-8004.1053.1 0.64 +0.7 1,005,752 + Xcc-8004.1053.1 0.64 -1.6 1,005,753 - Xcc-8004.1053.1 0.64 -2.4 1,005,753 - Xcc-8004.1053.1 0.64 -2.1 1,005,860 - Xcc-8004.1053.1 0.73 -2.6 1,005,917 + Xcc-8004.1053.1 0.78 -1.4 1,005,917 + Xcc-8004.1053.1 0.78 -2.4 1,005,917 + Xcc-8004.1053.1 0.78 -2.3 1,005,917 + Xcc-8004.1053.1 0.78 -0.6 1,005,917 + Xcc-8004.1053.1 0.78 -3.8 1,005,917 + Xcc-8004.1053.1 0.78 -0.9 1,005,917 + Xcc-8004.1053.1 0.78 -3.6 1,005,917 + Xcc-8004.1053.1 0.78 -1.3 1,005,918 - Xcc-8004.1053.1 0.79 -0.7 1,005,918 - Xcc-8004.1053.1 0.79 -0.6 1,005,918 - Xcc-8004.1053.1 0.79 -2.2 1,005,918 - Xcc-8004.1053.1 0.79 +0.5 1,005,918 - Xcc-8004.1053.1 0.79 -2.1 1,005,918 - Xcc-8004.1053.1 0.79 -0.9 1,005,918 - Xcc-8004.1053.1 0.79 -0.6 1,005,918 - Xcc-8004.1053.1 0.79 -0.6 1,006,010 + Xcc-8004.1053.1 0.87 -1.0 1,006,347 + -1.6 1,006,348 - -0.4 1,006,348 - -0.1 1,006,359 + +1.0 1,006,359 + -0.1 1,006,360 - +0.4 1,006,360 - +0.9 1,006,571 + Xcc-8004.1055.1 0.27 +0.2 1,006,572 - Xcc-8004.1055.1 0.27 +0.4 1,006,572 - Xcc-8004.1055.1 0.27 -0.4 1,006,588 - Xcc-8004.1055.1 0.29 +0.6 1,006,652 + Xcc-8004.1055.1 0.39 +0.4 1,006,670 + Xcc-8004.1055.1 0.42 +0.3 1,006,671 - Xcc-8004.1055.1 0.42 +0.1 1,006,671 - Xcc-8004.1055.1 0.42 -0.0 1,006,671 - Xcc-8004.1055.1 0.42 -1.1 1,006,674 + Xcc-8004.1055.1 0.43 -1.2 1,006,747 - Xcc-8004.1055.1 0.54 -1.1 1,006,771 - Xcc-8004.1055.1 0.58 -0.6 1,006,956 - Xcc-8004.1055.1 0.87 -0.4 1,006,956 - Xcc-8004.1055.1 0.87 +0.3
Or see this region's nucleotide sequence