Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1049.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,001,135	+				-0.0
1,001,136	-				+0.2
1,001,136	-				+0.5
1,001,136	-				-0.3
1,001,136	-				+0.7
1,001,323	+		Xcc-8004.1048.1	0.26	-0.2
1,001,323	+		Xcc-8004.1048.1	0.26	+0.7
1,001,324	-		Xcc-8004.1048.1	0.26	-0.4
1,001,324	-		Xcc-8004.1048.1	0.26	+0.2
1,001,880	+		Xcc-8004.1048.1	0.87	+0.5
1,002,020	+				+0.0
1,002,057	+				-0.3
1,002,057	+				-0.4
1,002,057	+				+0.1
1,002,057	+				-1.7
1,002,057	+				+0.7
1,002,057	+				+0.4
1,002,058	-				-0.6
1,002,058	-				+0.9
1,002,137	-				-1.7
1,002,196	+				-1.8
1,002,196	+				-3.8
1,002,196	+				-2.0
1,002,197	-				-2.5
1,002,197	-				-3.5
1,002,197	-				-2.8
1,002,197	-				-1.7
1,002,197	-				-3.5
1,002,197	-				-0.5
1,002,531	+		Xcc-8004.1049.1	0.31	-3.3
1,002,531	+		Xcc-8004.1049.1	0.31	-1.8
1,002,531	+		Xcc-8004.1049.1	0.31	-2.6
1,002,531	+		Xcc-8004.1049.1	0.31	-0.6
1,002,531	+		Xcc-8004.1049.1	0.31	-2.4
1,002,532	-		Xcc-8004.1049.1	0.31	-2.2
1,002,532	-		Xcc-8004.1049.1	0.31	-1.1
1,002,532	-		Xcc-8004.1049.1	0.31	-1.4
1,002,532	-		Xcc-8004.1049.1	0.31	-2.8
1,002,532	-		Xcc-8004.1049.1	0.31	-2.4
1,002,532	-		Xcc-8004.1049.1	0.31	-3.2
1,002,532	-		Xcc-8004.1049.1	0.31	-0.9
1,002,859	+		Xcc-8004.1049.1	0.53	-3.2
1,003,008	+		Xcc-8004.1049.1	0.63	-1.8
1,003,009	-		Xcc-8004.1049.1	0.63	-3.2
1,003,108	+		Xcc-8004.1049.1	0.70	-0.5
1,003,109	-		Xcc-8004.1049.1	0.70	-0.9
1,003,109	-		Xcc-8004.1049.1	0.70	-2.0
1,003,109	-		Xcc-8004.1049.1	0.70	-2.8
1,003,109	-		Xcc-8004.1049.1	0.70	-0.6
1,003,109	-		Xcc-8004.1049.1	0.70	-1.6
1,003,556	-				+0.5
1,003,599	+		Xcc-8004.1050.1	0.11	+0.6
1,003,600	-		Xcc-8004.1050.1	0.11	-4.2
1,003,633	+		Xcc-8004.1050.1	0.15	-2.5
1,003,634	-		Xcc-8004.1050.1	0.15	-4.1
1,003,763	+		Xcc-8004.1050.1	0.32	-1.6
1,003,763	+		Xcc-8004.1050.1	0.32	-2.5
1,003,970	+		Xcc-8004.1050.1	0.60	-1.7
1,003,971	-		Xcc-8004.1050.1	0.60	-2.6
1,004,121	-		Xcc-8004.1050.1	0.80	-2.2
1,004,274	+				+1.1
1,004,274	+				-0.6
1,004,275	-				-0.2
1,004,347	+				-0.1
1,004,347	+				-0.7