Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1036.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1035.1 and Xcc-8004.1036.1 are separated by 665 nucleotidesXcc-8004.1036.1 and Xcc-8004.1037.1 are separated by 68 nucleotidesXcc-8004.1037.1 and Xcc-8004.1038.1 are separated by 10 nucleotides Xcc-8004.1035.1: Xcc-8004.1035.1 - NADP-dependent malic enzyme (EC 1.1.1.40), at 982,389 to 984,698 Xcc-8004.1035.1 Xcc-8004.1036.1: Xcc-8004.1036.1 - Alpha-1,2-mannosidase, at 985,364 to 988,723 Xcc-8004.1036.1 Xcc-8004.1037.1: Xcc-8004.1037.1 - FIG01211600: hypothetical protein, at 988,792 to 989,259 Xcc-8004.1037.1 Xcc-8004.1038.1: Xcc-8004.1038.1 - Glycosyltransferase, at 989,270 to 990,382 Xcc-8004.1038.1 Position (kb) 985 986 987 988 989Strain fitness (log2 ratio) -2 -1 0 1at 984.704 kb on + strandat 984.705 kb on - strandat 984.705 kb on - strandat 984.888 kb on - strandat 984.943 kb on + strandat 984.980 kb on + strandat 985.025 kb on + strandat 985.026 kb on - strandat 985.106 kb on + strandat 985.172 kb on + strandat 985.173 kb on - strandat 985.326 kb on - strandat 985.452 kb on + strandat 985.609 kb on + strandat 985.609 kb on + strandat 985.609 kb on + strandat 985.610 kb on - strandat 985.610 kb on - strandat 985.611 kb on + strandat 985.613 kb on + strandat 985.613 kb on + strandat 985.613 kb on + strandat 985.613 kb on + strandat 985.614 kb on - strandat 985.614 kb on - strandat 985.614 kb on - strandat 985.941 kb on + strand, within Xcc-8004.1036.1at 985.941 kb on + strand, within Xcc-8004.1036.1at 985.941 kb on + strand, within Xcc-8004.1036.1at 985.941 kb on + strand, within Xcc-8004.1036.1at 985.942 kb on - strand, within Xcc-8004.1036.1at 985.942 kb on - strand, within Xcc-8004.1036.1at 985.942 kb on - strand, within Xcc-8004.1036.1at 985.942 kb on - strand, within Xcc-8004.1036.1at 985.942 kb on - strand, within Xcc-8004.1036.1at 986.068 kb on - strand, within Xcc-8004.1036.1at 986.158 kb on - strand, within Xcc-8004.1036.1at 986.158 kb on - strand, within Xcc-8004.1036.1at 986.158 kb on - strand, within Xcc-8004.1036.1at 986.220 kb on + strand, within Xcc-8004.1036.1at 986.220 kb on + strand, within Xcc-8004.1036.1at 986.221 kb on - strand, within Xcc-8004.1036.1at 986.254 kb on + strand, within Xcc-8004.1036.1at 986.254 kb on + strand, within Xcc-8004.1036.1at 986.254 kb on + strand, within Xcc-8004.1036.1at 986.255 kb on - strand, within Xcc-8004.1036.1at 986.262 kb on + strand, within Xcc-8004.1036.1at 986.262 kb on + strand, within Xcc-8004.1036.1at 986.262 kb on + strand, within Xcc-8004.1036.1at 986.262 kb on + strand, within Xcc-8004.1036.1at 986.262 kb on + strand, within Xcc-8004.1036.1at 986.262 kb on + strand, within Xcc-8004.1036.1at 986.263 kb on - strand, within Xcc-8004.1036.1at 986.263 kb on - strand, within Xcc-8004.1036.1at 986.263 kb on - strand, within Xcc-8004.1036.1at 986.365 kb on + strand, within Xcc-8004.1036.1at 986.365 kb on + strand, within Xcc-8004.1036.1at 986.366 kb on - strand, within Xcc-8004.1036.1at 986.366 kb on - strand, within Xcc-8004.1036.1at 986.400 kb on + strand, within Xcc-8004.1036.1at 986.401 kb on - strand, within Xcc-8004.1036.1at 986.401 kb on - strand, within Xcc-8004.1036.1at 986.533 kb on + strand, within Xcc-8004.1036.1at 987.018 kb on + strand, within Xcc-8004.1036.1at 987.043 kb on + strand, within Xcc-8004.1036.1at 987.043 kb on + strand, within Xcc-8004.1036.1at 987.043 kb on + strand, within Xcc-8004.1036.1at 987.044 kb on - strand, within Xcc-8004.1036.1at 987.067 kb on - strand, within Xcc-8004.1036.1at 987.150 kb on + strand, within Xcc-8004.1036.1at 987.150 kb on + strand, within Xcc-8004.1036.1at 987.150 kb on + strand, within Xcc-8004.1036.1at 987.231 kb on + strand, within Xcc-8004.1036.1at 987.493 kb on + strand, within Xcc-8004.1036.1at 987.507 kb on + strand, within Xcc-8004.1036.1at 987.513 kb on + strand, within Xcc-8004.1036.1at 987.513 kb on + strand, within Xcc-8004.1036.1at 987.514 kb on - strand, within Xcc-8004.1036.1at 987.514 kb on - strand, within Xcc-8004.1036.1at 987.558 kb on + strand, within Xcc-8004.1036.1at 987.726 kb on + strand, within Xcc-8004.1036.1at 987.727 kb on - strand, within Xcc-8004.1036.1at 987.927 kb on + strand, within Xcc-8004.1036.1at 987.927 kb on + strand, within Xcc-8004.1036.1at 987.928 kb on - strand, within Xcc-8004.1036.1at 987.928 kb on - strand, within Xcc-8004.1036.1at 987.928 kb on - strand, within Xcc-8004.1036.1at 987.928 kb on - strand, within Xcc-8004.1036.1at 987.928 kb on - strand, within Xcc-8004.1036.1at 988.211 kb on + strand, within Xcc-8004.1036.1at 988.239 kb on + strand, within Xcc-8004.1036.1at 988.239 kb on + strand, within Xcc-8004.1036.1at 988.240 kb on - strand, within Xcc-8004.1036.1at 988.240 kb on - strand, within Xcc-8004.1036.1at 988.240 kb on - strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.353 kb on + strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.354 kb on - strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.357 kb on + strand, within Xcc-8004.1036.1at 988.441 kb on + strandat 988.441 kb on + strandat 988.479 kb on + strandat 988.479 kb on + strandat 988.479 kb on + strandat 988.479 kb on + strandat 988.479 kb on + strandat 988.480 kb on - strandat 988.480 kb on - strandat 988.480 kb on - strandat 988.527 kb on + strandat 988.527 kb on + strandat 988.528 kb on - strandat 988.839 kb on + strand, within Xcc-8004.1037.1at 988.840 kb on - strand, within Xcc-8004.1037.1at 989.022 kb on + strand, within Xcc-8004.1037.1at 989.022 kb on + strand, within Xcc-8004.1037.1at 989.023 kb on - strand, within Xcc-8004.1037.1at 989.104 kb on + strand, within Xcc-8004.1037.1at 989.182 kb on + strand, within Xcc-8004.1037.1at 989.182 kb on + strand, within Xcc-8004.1037.1at 989.182 kb on + strand, within Xcc-8004.1037.1at 989.183 kb on - strand, within Xcc-8004.1037.1at 989.183 kb on - strand, within Xcc-8004.1037.1at 989.228 kb on - strandat 989.524 kb on + strand, within Xcc-8004.1038.1at 989.525 kb on - strand, within Xcc-8004.1038.1at 989.568 kb on - strand, within Xcc-8004.1038.1at 989.568 kb on - strand, within Xcc-8004.1038.1at 989.663 kb on + strand, within Xcc-8004.1038.1at 989.663 kb on + strand, within Xcc-8004.1038.1at 989.678 kb on - strand, within Xcc-8004.1038.1at 989.705 kb on + strand, within Xcc-8004.1038.1at 989.705 kb on + strand, within Xcc-8004.1038.1at 989.705 kb on + strand, within Xcc-8004.1038.1at 989.705 kb on + strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1at 989.706 kb on - strand, within Xcc-8004.1038.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
984,704 + -0.2
984,705 - -1.4
984,705 - -1.1
984,888 - -0.9
984,943 + -0.5
984,980 + -0.4
985,025 + -1.5
985,026 - -0.0
985,106 + -0.1
985,172 + -0.8
985,173 - +0.3
985,326 - +0.2
985,452 + +0.7
985,609 + -1.3
985,609 + +0.7
985,609 + -0.6
985,610 - +0.7
985,610 - -0.3
985,611 + +0.2
985,613 + +0.1
985,613 + -1.2
985,613 + -0.5
985,613 + +1.0
985,614 - +0.1
985,614 - +0.9
985,614 - -0.3
985,941 + Xcc-8004.1036.1 0.17 -0.3
985,941 + Xcc-8004.1036.1 0.17 +0.8
985,941 + Xcc-8004.1036.1 0.17 -0.0
985,941 + Xcc-8004.1036.1 0.17 -0.2
985,942 - Xcc-8004.1036.1 0.17 -0.4
985,942 - Xcc-8004.1036.1 0.17 +0.6
985,942 - Xcc-8004.1036.1 0.17 -1.1
985,942 - Xcc-8004.1036.1 0.17 -0.5
985,942 - Xcc-8004.1036.1 0.17 +1.7
986,068 - Xcc-8004.1036.1 0.21 +0.4
986,158 - Xcc-8004.1036.1 0.24 -0.0
986,158 - Xcc-8004.1036.1 0.24 -0.2
986,158 - Xcc-8004.1036.1 0.24 +0.3
986,220 + Xcc-8004.1036.1 0.25 -1.4
986,220 + Xcc-8004.1036.1 0.25 +0.7
986,221 - Xcc-8004.1036.1 0.26 -1.3
986,254 + Xcc-8004.1036.1 0.26 -0.7
986,254 + Xcc-8004.1036.1 0.26 -0.1
986,254 + Xcc-8004.1036.1 0.26 -0.2
986,255 - Xcc-8004.1036.1 0.27 -0.2
986,262 + Xcc-8004.1036.1 0.27 -1.0
986,262 + Xcc-8004.1036.1 0.27 -0.1
986,262 + Xcc-8004.1036.1 0.27 +0.6
986,262 + Xcc-8004.1036.1 0.27 +1.0
986,262 + Xcc-8004.1036.1 0.27 +0.2
986,262 + Xcc-8004.1036.1 0.27 +0.6
986,263 - Xcc-8004.1036.1 0.27 +0.4
986,263 - Xcc-8004.1036.1 0.27 -0.0
986,263 - Xcc-8004.1036.1 0.27 +1.3
986,365 + Xcc-8004.1036.1 0.30 +0.3
986,365 + Xcc-8004.1036.1 0.30 -0.6
986,366 - Xcc-8004.1036.1 0.30 +1.5
986,366 - Xcc-8004.1036.1 0.30 -0.6
986,400 + Xcc-8004.1036.1 0.31 +0.4
986,401 - Xcc-8004.1036.1 0.31 -0.9
986,401 - Xcc-8004.1036.1 0.31 -0.6
986,533 + Xcc-8004.1036.1 0.35 +0.1
987,018 + Xcc-8004.1036.1 0.49 +0.0
987,043 + Xcc-8004.1036.1 0.50 +0.0
987,043 + Xcc-8004.1036.1 0.50 -0.1
987,043 + Xcc-8004.1036.1 0.50 +0.3
987,044 - Xcc-8004.1036.1 0.50 -0.7
987,067 - Xcc-8004.1036.1 0.51 +1.5
987,150 + Xcc-8004.1036.1 0.53 -0.8
987,150 + Xcc-8004.1036.1 0.53 -0.3
987,150 + Xcc-8004.1036.1 0.53 +0.6
987,231 + Xcc-8004.1036.1 0.56 -2.1
987,493 + Xcc-8004.1036.1 0.63 -0.3
987,507 + Xcc-8004.1036.1 0.64 -0.5
987,513 + Xcc-8004.1036.1 0.64 +0.5
987,513 + Xcc-8004.1036.1 0.64 +0.6
987,514 - Xcc-8004.1036.1 0.64 -0.8
987,514 - Xcc-8004.1036.1 0.64 +1.2
987,558 + Xcc-8004.1036.1 0.65 -1.0
987,726 + Xcc-8004.1036.1 0.70 -0.9
987,727 - Xcc-8004.1036.1 0.70 -0.4
987,927 + Xcc-8004.1036.1 0.76 -0.7
987,927 + Xcc-8004.1036.1 0.76 -0.3
987,928 - Xcc-8004.1036.1 0.76 -0.6
987,928 - Xcc-8004.1036.1 0.76 +0.9
987,928 - Xcc-8004.1036.1 0.76 -0.4
987,928 - Xcc-8004.1036.1 0.76 -0.0
987,928 - Xcc-8004.1036.1 0.76 -0.3
988,211 + Xcc-8004.1036.1 0.85 +0.3
988,239 + Xcc-8004.1036.1 0.86 -0.1
988,239 + Xcc-8004.1036.1 0.86 -0.5
988,240 - Xcc-8004.1036.1 0.86 -2.6
988,240 - Xcc-8004.1036.1 0.86 -0.7
988,240 - Xcc-8004.1036.1 0.86 +0.1
988,353 + Xcc-8004.1036.1 0.89 +0.7
988,353 + Xcc-8004.1036.1 0.89 +0.2
988,353 + Xcc-8004.1036.1 0.89 +0.3
988,353 + Xcc-8004.1036.1 0.89 +0.9
988,353 + Xcc-8004.1036.1 0.89 -0.8
988,353 + Xcc-8004.1036.1 0.89 +0.5
988,353 + Xcc-8004.1036.1 0.89 +0.7
988,353 + Xcc-8004.1036.1 0.89 -0.4
988,353 + Xcc-8004.1036.1 0.89 +0.4
988,353 + Xcc-8004.1036.1 0.89 -0.5
988,353 + Xcc-8004.1036.1 0.89 +1.2
988,353 + Xcc-8004.1036.1 0.89 +1.2
988,354 - Xcc-8004.1036.1 0.89 +0.7
988,354 - Xcc-8004.1036.1 0.89 -0.1
988,354 - Xcc-8004.1036.1 0.89 +1.1
988,354 - Xcc-8004.1036.1 0.89 -1.9
988,354 - Xcc-8004.1036.1 0.89 -1.0
988,354 - Xcc-8004.1036.1 0.89 +0.2
988,354 - Xcc-8004.1036.1 0.89 -0.6
988,354 - Xcc-8004.1036.1 0.89 +1.2
988,354 - Xcc-8004.1036.1 0.89 +0.5
988,354 - Xcc-8004.1036.1 0.89 +0.3
988,357 + Xcc-8004.1036.1 0.89 -0.9
988,357 + Xcc-8004.1036.1 0.89 -1.1
988,357 + Xcc-8004.1036.1 0.89 -0.3
988,357 + Xcc-8004.1036.1 0.89 -0.8
988,357 + Xcc-8004.1036.1 0.89 -0.4
988,357 + Xcc-8004.1036.1 0.89 +0.0
988,357 + Xcc-8004.1036.1 0.89 -0.3
988,441 + +0.6
988,441 + -0.0
988,479 + +0.4
988,479 + -0.5
988,479 + +0.4
988,479 + +1.4
988,479 + -1.3
988,480 - +0.7
988,480 - +0.9
988,480 - +0.3
988,527 + +0.7
988,527 + +0.1
988,528 - -0.0
988,839 + Xcc-8004.1037.1 0.10 +0.8
988,840 - Xcc-8004.1037.1 0.10 -1.9
989,022 + Xcc-8004.1037.1 0.49 -0.5
989,022 + Xcc-8004.1037.1 0.49 -0.1
989,023 - Xcc-8004.1037.1 0.49 -0.4
989,104 + Xcc-8004.1037.1 0.67 +0.1
989,182 + Xcc-8004.1037.1 0.83 -0.4
989,182 + Xcc-8004.1037.1 0.83 +0.7
989,182 + Xcc-8004.1037.1 0.83 -0.1
989,183 - Xcc-8004.1037.1 0.84 +0.6
989,183 - Xcc-8004.1037.1 0.84 +0.3
989,228 - +0.6
989,524 + Xcc-8004.1038.1 0.23 -0.7
989,525 - Xcc-8004.1038.1 0.23 -0.1
989,568 - Xcc-8004.1038.1 0.27 -0.4
989,568 - Xcc-8004.1038.1 0.27 +0.6
989,663 + Xcc-8004.1038.1 0.35 +0.3
989,663 + Xcc-8004.1038.1 0.35 -0.3
989,678 - Xcc-8004.1038.1 0.37 -0.1
989,705 + Xcc-8004.1038.1 0.39 -0.3
989,705 + Xcc-8004.1038.1 0.39 -0.4
989,705 + Xcc-8004.1038.1 0.39 +1.4
989,705 + Xcc-8004.1038.1 0.39 +1.4
989,706 - Xcc-8004.1038.1 0.39 +0.4
989,706 - Xcc-8004.1038.1 0.39 -1.4
989,706 - Xcc-8004.1038.1 0.39 +1.0
989,706 - Xcc-8004.1038.1 0.39 +0.2
989,706 - Xcc-8004.1038.1 0.39 -0.1
989,706 - Xcc-8004.1038.1 0.39 +1.1
989,706 - Xcc-8004.1038.1 0.39 +0.7

Or see this region's nucleotide sequence