Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1010.1 and Xcc-8004.1012.1 are separated by 46 nucleotides Xcc-8004.1012.1 and Xcc-8004.1013.1 are separated by 211 nucleotides
Xcc-8004.1010.1: Xcc-8004.1010.1 - Aspartate aminotransferase (EC 2.6.1.1), at 954,779 to 956,050
Xcc-8004.1010.1
Xcc-8004.1012.1: Xcc-8004.1012.1 - hypothetical protein, at 956,097 to 956,879
Xcc-8004.1012.1
Xcc-8004.1013.1: Xcc-8004.1013.1 - Probable GTPase related to EngC, at 957,091 to 958,182
Xcc-8004.1013.1
Position (kb) 956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 955.392 kb on + strand, within Xcc-8004.1010.1 at 955.393 kb on - strand, within Xcc-8004.1010.1 at 955.407 kb on + strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.483 kb on - strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1 at 955.782 kb on + strand, within Xcc-8004.1010.1 at 955.783 kb on - strand, within Xcc-8004.1010.1 at 955.831 kb on + strand, within Xcc-8004.1010.1 at 955.831 kb on + strand, within Xcc-8004.1010.1 at 955.832 kb on - strand, within Xcc-8004.1010.1 at 955.832 kb on - strand, within Xcc-8004.1010.1 at 955.832 kb on - strand, within Xcc-8004.1010.1 at 955.834 kb on - strand, within Xcc-8004.1010.1 at 956.050 kb on + strand at 956.051 kb on - strand at 956.051 kb on - strand at 956.051 kb on - strand at 956.051 kb on - strand at 956.066 kb on + strand at 956.067 kb on - strand at 956.067 kb on - strand at 956.067 kb on - strand at 956.096 kb on + strand at 956.096 kb on + strand at 956.097 kb on - strand at 956.187 kb on - strand, within Xcc-8004.1012.1 at 956.289 kb on + strand, within Xcc-8004.1012.1 at 956.452 kb on + strand, within Xcc-8004.1012.1 at 956.452 kb on + strand, within Xcc-8004.1012.1 at 956.453 kb on - strand, within Xcc-8004.1012.1 at 956.472 kb on - strand, within Xcc-8004.1012.1 at 956.496 kb on + strand, within Xcc-8004.1012.1 at 956.497 kb on - strand, within Xcc-8004.1012.1 at 956.527 kb on - strand, within Xcc-8004.1012.1 at 956.567 kb on + strand, within Xcc-8004.1012.1 at 956.568 kb on - strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.611 kb on - strand, within Xcc-8004.1012.1 at 956.681 kb on + strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.683 kb on + strand, within Xcc-8004.1012.1 at 956.683 kb on + strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.891 kb on + strand at 956.891 kb on + strand at 956.892 kb on - strand at 956.895 kb on + strand at 956.895 kb on + strand at 956.896 kb on - strand at 956.896 kb on - strand at 956.988 kb on - strand at 957.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 955,392 + Xcc-8004.1010.1 0.48 -3.7 955,393 - Xcc-8004.1010.1 0.48 -1.4 955,407 + Xcc-8004.1010.1 0.49 -0.7 955,408 - Xcc-8004.1010.1 0.49 -0.7 955,408 - Xcc-8004.1010.1 0.49 -0.4 955,483 - Xcc-8004.1010.1 0.55 -1.6 955,599 + Xcc-8004.1010.1 0.64 -2.2 955,599 + Xcc-8004.1010.1 0.64 -2.1 955,602 + Xcc-8004.1010.1 0.65 -1.9 955,602 + Xcc-8004.1010.1 0.65 -2.5 955,782 + Xcc-8004.1010.1 0.79 -3.2 955,783 - Xcc-8004.1010.1 0.79 -2.1 955,831 + Xcc-8004.1010.1 0.83 -3.7 955,831 + Xcc-8004.1010.1 0.83 -0.9 955,832 - Xcc-8004.1010.1 0.83 -1.7 955,832 - Xcc-8004.1010.1 0.83 -0.5 955,832 - Xcc-8004.1010.1 0.83 -1.9 955,834 - Xcc-8004.1010.1 0.83 -0.3 956,050 + -2.6 956,051 - -1.4 956,051 - -1.0 956,051 - +0.5 956,051 - -0.4 956,066 + -3.1 956,067 - -2.1 956,067 - +0.3 956,067 - +0.6 956,096 + -0.7 956,096 + +0.5 956,097 - +1.5 956,187 - Xcc-8004.1012.1 0.11 +0.9 956,289 + Xcc-8004.1012.1 0.25 +0.3 956,452 + Xcc-8004.1012.1 0.45 -1.1 956,452 + Xcc-8004.1012.1 0.45 +0.0 956,453 - Xcc-8004.1012.1 0.45 -0.1 956,472 - Xcc-8004.1012.1 0.48 -1.2 956,496 + Xcc-8004.1012.1 0.51 -1.1 956,497 - Xcc-8004.1012.1 0.51 +1.2 956,527 - Xcc-8004.1012.1 0.55 +0.6 956,567 + Xcc-8004.1012.1 0.60 -0.3 956,568 - Xcc-8004.1012.1 0.60 +0.7 956,570 + Xcc-8004.1012.1 0.60 +0.2 956,570 + Xcc-8004.1012.1 0.60 -1.0 956,570 + Xcc-8004.1012.1 0.60 -1.0 956,611 - Xcc-8004.1012.1 0.66 +0.1 956,681 + Xcc-8004.1012.1 0.75 +1.0 956,682 - Xcc-8004.1012.1 0.75 -0.5 956,682 - Xcc-8004.1012.1 0.75 -0.4 956,682 - Xcc-8004.1012.1 0.75 -0.4 956,683 + Xcc-8004.1012.1 0.75 +1.6 956,683 + Xcc-8004.1012.1 0.75 +0.3 956,684 - Xcc-8004.1012.1 0.75 +0.2 956,684 - Xcc-8004.1012.1 0.75 -0.2 956,684 - Xcc-8004.1012.1 0.75 +0.5 956,684 - Xcc-8004.1012.1 0.75 +1.0 956,684 - Xcc-8004.1012.1 0.75 +0.8 956,891 + +1.3 956,891 + -0.1 956,892 - -0.3 956,895 + -0.3 956,895 + +0.5 956,896 - +0.6 956,896 - -0.4 956,988 - -0.0 957,079 + -0.8
Or see this region's nucleotide sequence