Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1008.1 and Xcc-8004.1009.1 are separated by 33 nucleotides Xcc-8004.1009.1 and Xcc-8004.1010.1 overlap by 1 nucleotides
Xcc-8004.1008.1: Xcc-8004.1008.1 - FIG01211317: hypothetical protein, at 953,427 to 954,122
Xcc-8004.1008.1
Xcc-8004.1009.1: Xcc-8004.1009.1 - Lysophospholipase L1 and related esterases, at 954,156 to 954,779
Xcc-8004.1009.1
Xcc-8004.1010.1: Xcc-8004.1010.1 - Aspartate aminotransferase (EC 2.6.1.1), at 954,779 to 956,050
Xcc-8004.1010.1
Position (kb) 954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 953.285 kb on + strand at 953.285 kb on + strand at 953.306 kb on + strand at 953.306 kb on + strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.310 kb on + strand at 953.311 kb on - strand at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.723 kb on - strand, within Xcc-8004.1008.1 at 953.801 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 954.019 kb on + strand, within Xcc-8004.1008.1 at 954.020 kb on - strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.023 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.031 kb on + strand, within Xcc-8004.1008.1 at 954.158 kb on - strand at 954.208 kb on + strand at 954.208 kb on + strand at 954.209 kb on - strand at 954.209 kb on - strand at 954.209 kb on - strand at 954.209 kb on - strand at 954.477 kb on + strand, within Xcc-8004.1009.1 at 954.477 kb on + strand, within Xcc-8004.1009.1 at 954.477 kb on + strand, within Xcc-8004.1009.1 at 954.662 kb on - strand, within Xcc-8004.1009.1 at 954.730 kb on + strand at 954.730 kb on + strand at 954.731 kb on - strand at 954.751 kb on + strand at 954.752 kb on - strand at 955.038 kb on + strand, within Xcc-8004.1010.1 at 955.039 kb on - strand, within Xcc-8004.1010.1 at 955.039 kb on - strand, within Xcc-8004.1010.1 at 955.392 kb on + strand, within Xcc-8004.1010.1 at 955.393 kb on - strand, within Xcc-8004.1010.1 at 955.407 kb on + strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.483 kb on - strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 953,285 + +1.0 953,285 + +0.5 953,306 + +0.2 953,306 + -0.2 953,307 - -0.2 953,307 - +0.7 953,307 - -0.5 953,310 + -2.0 953,311 - +1.4 953,545 + Xcc-8004.1008.1 0.17 -0.1 953,545 + Xcc-8004.1008.1 0.17 +0.0 953,546 - Xcc-8004.1008.1 0.17 -2.0 953,546 - Xcc-8004.1008.1 0.17 -1.3 953,723 - Xcc-8004.1008.1 0.43 +0.7 953,801 + Xcc-8004.1008.1 0.54 +0.1 953,964 + Xcc-8004.1008.1 0.77 -1.2 953,964 + Xcc-8004.1008.1 0.77 +0.8 953,964 + Xcc-8004.1008.1 0.77 -0.2 954,019 + Xcc-8004.1008.1 0.85 +1.0 954,020 - Xcc-8004.1008.1 0.85 -0.2 954,022 + Xcc-8004.1008.1 0.85 -0.6 954,022 + Xcc-8004.1008.1 0.85 +0.1 954,022 + Xcc-8004.1008.1 0.85 +0.3 954,023 - Xcc-8004.1008.1 0.86 -0.9 954,026 - Xcc-8004.1008.1 0.86 +1.4 954,026 - Xcc-8004.1008.1 0.86 +0.1 954,026 - Xcc-8004.1008.1 0.86 -0.3 954,031 + Xcc-8004.1008.1 0.87 +0.4 954,158 - +0.7 954,208 + -1.3 954,208 + -0.6 954,209 - +0.0 954,209 - -1.6 954,209 - +1.7 954,209 - -1.5 954,477 + Xcc-8004.1009.1 0.51 -0.8 954,477 + Xcc-8004.1009.1 0.51 +0.4 954,477 + Xcc-8004.1009.1 0.51 -1.0 954,662 - Xcc-8004.1009.1 0.81 +0.3 954,730 + -1.5 954,730 + +0.1 954,731 - -0.9 954,751 + +0.3 954,752 - -0.4 955,038 + Xcc-8004.1010.1 0.20 -2.5 955,039 - Xcc-8004.1010.1 0.20 -1.8 955,039 - Xcc-8004.1010.1 0.20 -2.3 955,392 + Xcc-8004.1010.1 0.48 -3.7 955,393 - Xcc-8004.1010.1 0.48 -1.4 955,407 + Xcc-8004.1010.1 0.49 -0.7 955,408 - Xcc-8004.1010.1 0.49 -0.7 955,408 - Xcc-8004.1010.1 0.49 -0.4 955,483 - Xcc-8004.1010.1 0.55 -1.6 955,599 + Xcc-8004.1010.1 0.64 -2.2 955,599 + Xcc-8004.1010.1 0.64 -2.1 955,602 + Xcc-8004.1010.1 0.65 -1.9 955,602 + Xcc-8004.1010.1 0.65 -2.5
Or see this region's nucleotide sequence