Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1005.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1002.1 and Xcc-8004.1003.1 are separated by 14 nucleotidesXcc-8004.1003.1 and Xcc-8004.1004.1 are separated by 11 nucleotidesXcc-8004.1004.1 and Xcc-8004.1005.1 are separated by 204 nucleotidesXcc-8004.1005.1 and Xcc-8004.1006.1 are separated by 70 nucleotides Xcc-8004.1002.1: Xcc-8004.1002.1 - FIG01095481: hypothetical protein, at 947,894 to 949,417 Xcc-8004.1002.1 Xcc-8004.1003.1: Xcc-8004.1003.1 - FIG027190: Putative transmembrane protein, at 949,432 to 949,992 Xcc-8004.1003.1 Xcc-8004.1004.1: Xcc-8004.1004.1 - hypothetical protein, at 950,004 to 950,120 Xcc-8004.1004.1 Xcc-8004.1005.1: Xcc-8004.1005.1 - FIG01210629: hypothetical protein, at 950,325 to 951,224 Xcc-8004.1005.1 Xcc-8004.1006.1: Xcc-8004.1006.1 - Glutaredoxin-like protein, at 951,295 to 952,221 Xcc-8004.1006.1 Position (kb) 950 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 949.331 kb on - strandat 949.411 kb on + strandat 949.685 kb on - strand, within Xcc-8004.1003.1at 949.777 kb on + strand, within Xcc-8004.1003.1at 950.155 kb on + strandat 950.155 kb on + strandat 950.156 kb on - strandat 950.156 kb on - strandat 950.379 kb on + strandat 950.380 kb on - strandat 950.380 kb on - strandat 950.380 kb on - strandat 950.383 kb on + strandat 950.383 kb on + strandat 950.383 kb on + strandat 950.384 kb on - strandat 950.393 kb on - strandat 951.064 kb on + strand, within Xcc-8004.1005.1at 951.064 kb on + strand, within Xcc-8004.1005.1at 951.064 kb on + strand, within Xcc-8004.1005.1at 951.065 kb on - strand, within Xcc-8004.1005.1at 951.097 kb on + strand, within Xcc-8004.1005.1at 951.097 kb on + strand, within Xcc-8004.1005.1at 951.097 kb on + strand, within Xcc-8004.1005.1at 951.098 kb on - strand, within Xcc-8004.1005.1at 951.098 kb on - strand, within Xcc-8004.1005.1at 951.299 kb on + strandat 951.299 kb on + strandat 951.300 kb on - strandat 951.300 kb on - strandat 951.359 kb on + strandat 951.360 kb on - strandat 951.360 kb on - strandat 951.369 kb on + strandat 951.408 kb on + strand, within Xcc-8004.1006.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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949,331 - +2.2
949,411 + +0.4
949,685 - Xcc-8004.1003.1 0.45 -0.5
949,777 + Xcc-8004.1003.1 0.61 -0.7
950,155 + +0.1
950,155 + -0.1
950,156 - +0.6
950,156 - +0.0
950,379 + -0.4
950,380 - +0.0
950,380 - -0.1
950,380 - +1.2
950,383 + -0.7
950,383 + +0.4
950,383 + -0.2
950,384 - -0.9
950,393 - +0.4
951,064 + Xcc-8004.1005.1 0.82 +0.1
951,064 + Xcc-8004.1005.1 0.82 -0.3
951,064 + Xcc-8004.1005.1 0.82 -0.5
951,065 - Xcc-8004.1005.1 0.82 -0.4
951,097 + Xcc-8004.1005.1 0.86 -2.2
951,097 + Xcc-8004.1005.1 0.86 -1.5
951,097 + Xcc-8004.1005.1 0.86 -2.8
951,098 - Xcc-8004.1005.1 0.86 -0.9
951,098 - Xcc-8004.1005.1 0.86 -1.4
951,299 + -0.8
951,299 + -2.0
951,300 - -2.4
951,300 - -2.4
951,359 + -0.9
951,360 - -0.9
951,360 - -0.9
951,369 + -2.0
951,408 + Xcc-8004.1006.1 0.12 +1.0

Or see this region's nucleotide sequence