Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11855 and BWI76_RS11860 overlap by 1 nucleotides BWI76_RS11860 and BWI76_RS11865 are separated by 358 nucleotides
BWI76_RS11855: BWI76_RS11855 - bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase, at 2,492,334 to 2,493,929
_RS11855
BWI76_RS11860: BWI76_RS11860 - anthranilate synthase component I, at 2,493,929 to 2,495,491
_RS11860
BWI76_RS11865: BWI76_RS11865 - phosphatase, at 2,495,850 to 2,496,719
_RS11865
Position (kb)
2493
2494
2495
2496 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2493.033 kb on + strand, within BWI76_RS11855 at 2493.262 kb on + strand, within BWI76_RS11855 at 2493.342 kb on - strand, within BWI76_RS11855 at 2493.352 kb on - strand, within BWI76_RS11855 at 2493.681 kb on + strand, within BWI76_RS11855 at 2493.766 kb on - strand, within BWI76_RS11855 at 2493.810 kb on - strand at 2493.856 kb on - strand at 2494.054 kb on - strand at 2494.333 kb on + strand, within BWI76_RS11860 at 2494.357 kb on + strand at 2494.359 kb on + strand, within BWI76_RS11860 at 2494.447 kb on - strand, within BWI76_RS11860 at 2494.583 kb on - strand, within BWI76_RS11860 at 2494.752 kb on + strand, within BWI76_RS11860 at 2494.845 kb on - strand, within BWI76_RS11860 at 2495.032 kb on + strand, within BWI76_RS11860 at 2495.141 kb on - strand, within BWI76_RS11860 at 2495.173 kb on + strand, within BWI76_RS11860 at 2495.199 kb on + strand, within BWI76_RS11860 at 2495.240 kb on - strand, within BWI76_RS11860 at 2495.373 kb on + strand at 2495.453 kb on + strand at 2495.476 kb on + strand at 2495.484 kb on - strand at 2495.946 kb on + strand, within BWI76_RS11865 at 2496.480 kb on - strand, within BWI76_RS11865
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,493,033 + BWI76_RS11855 0.44 -5.8 2,493,262 + BWI76_RS11855 0.58 -6.1 2,493,342 - BWI76_RS11855 0.63 -4.1 2,493,352 - BWI76_RS11855 0.64 -4.3 2,493,681 + BWI76_RS11855 0.84 -2.9 2,493,766 - BWI76_RS11855 0.90 -3.2 2,493,810 - -5.0 2,493,856 - -4.1 2,494,054 - -3.9 2,494,333 + BWI76_RS11860 0.26 -4.2 2,494,357 + -0.8 2,494,359 + BWI76_RS11860 0.28 -2.9 2,494,447 - BWI76_RS11860 0.33 -4.5 2,494,583 - BWI76_RS11860 0.42 -4.2 2,494,752 + BWI76_RS11860 0.53 -6.2 2,494,845 - BWI76_RS11860 0.59 -1.2 2,495,032 + BWI76_RS11860 0.71 -4.1 2,495,141 - BWI76_RS11860 0.78 -5.5 2,495,173 + BWI76_RS11860 0.80 -4.6 2,495,199 + BWI76_RS11860 0.81 -2.2 2,495,240 - BWI76_RS11860 0.84 -2.8 2,495,373 + -4.6 2,495,453 + -3.3 2,495,476 + -5.2 2,495,484 - -4.1 2,495,946 + BWI76_RS11865 0.11 -0.0 2,496,480 - BWI76_RS11865 0.72 -0.7
Or see this region's nucleotide sequence