Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09680 and BWI76_RS09685 are separated by 10 nucleotides BWI76_RS09685 and BWI76_RS09690 are separated by 1 nucleotides BWI76_RS09690 and BWI76_RS09695 are separated by 274 nucleotides
BWI76_RS09680: BWI76_RS09680 - dimethyl sulfoxide reductase subunit A, at 2,028,693 to 2,031,131
_RS09680
BWI76_RS09685: BWI76_RS09685 - dimethylsulfoxide reductase, chain B, at 2,031,142 to 2,031,759
_RS09685
BWI76_RS09690: BWI76_RS09690 - dimethyl sulfoxide reductase, at 2,031,761 to 2,032,624
_RS09690
BWI76_RS09695: BWI76_RS09695 - MFS transporter, at 2,032,899 to 2,034,047
_RS09695
Position (kb)
2031
2032
2033 Strain fitness (log2 ratio)
-1
0
1 at 2030.994 kb on - strand at 2030.998 kb on - strand at 2030.998 kb on - strand at 2031.012 kb on - strand at 2031.140 kb on - strand at 2031.752 kb on - strand at 2031.861 kb on - strand, within BWI76_RS09690 at 2032.470 kb on - strand, within BWI76_RS09690 at 2032.503 kb on - strand, within BWI76_RS09690 at 2032.643 kb on + strand at 2032.881 kb on + strand at 2032.889 kb on + strand at 2032.906 kb on + strand at 2032.920 kb on + strand at 2033.157 kb on + strand, within BWI76_RS09695 at 2033.255 kb on + strand, within BWI76_RS09695 at 2033.485 kb on + strand, within BWI76_RS09695
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,030,994 - +0.0 2,030,998 - -0.7 2,030,998 - -0.1 2,031,012 - -0.6 2,031,140 - +1.2 2,031,752 - +0.9 2,031,861 - BWI76_RS09690 0.12 -1.2 2,032,470 - BWI76_RS09690 0.82 -0.7 2,032,503 - BWI76_RS09690 0.86 -1.6 2,032,643 + -0.6 2,032,881 + +0.0 2,032,889 + +0.3 2,032,906 + +1.0 2,032,920 + -0.1 2,033,157 + BWI76_RS09695 0.22 -1.0 2,033,255 + BWI76_RS09695 0.31 -0.2 2,033,485 + BWI76_RS09695 0.51 +0.1
Or see this region's nucleotide sequence