Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07505 and BWI76_RS07510 are separated by 173 nucleotides BWI76_RS07510 and BWI76_RS07515 are separated by 52 nucleotides
BWI76_RS07505: BWI76_RS07505 - hydrophobe/amphiphile efflux-1 family RND transporter, at 1,585,689 to 1,588,781
_RS07505
BWI76_RS07510: BWI76_RS07510 - hypothetical protein, at 1,588,955 to 1,589,674
_RS07510
BWI76_RS07515: BWI76_RS07515 - glutamate--cysteine ligase, at 1,589,727 to 1,590,842
_RS07515
Position (kb)
1588
1589
1590 Strain fitness (log2 ratio)
-2
-1
0
1 at 1587.998 kb on + strand, within BWI76_RS07505 at 1588.348 kb on - strand, within BWI76_RS07505 at 1588.360 kb on + strand, within BWI76_RS07505 at 1588.400 kb on + strand, within BWI76_RS07505 at 1588.419 kb on + strand, within BWI76_RS07505 at 1588.639 kb on + strand at 1588.679 kb on + strand at 1588.687 kb on - strand at 1588.804 kb on - strand at 1588.880 kb on + strand at 1589.081 kb on - strand, within BWI76_RS07510 at 1589.166 kb on + strand, within BWI76_RS07510 at 1589.166 kb on + strand, within BWI76_RS07510 at 1589.233 kb on + strand, within BWI76_RS07510 at 1589.691 kb on + strand at 1589.716 kb on - strand at 1589.732 kb on - strand at 1589.846 kb on + strand, within BWI76_RS07515 at 1589.991 kb on - strand, within BWI76_RS07515 at 1590.009 kb on - strand, within BWI76_RS07515 at 1590.213 kb on - strand, within BWI76_RS07515 at 1590.588 kb on + strand, within BWI76_RS07515
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,587,998 + BWI76_RS07505 0.75 -0.0 1,588,348 - BWI76_RS07505 0.86 +0.0 1,588,360 + BWI76_RS07505 0.86 -0.0 1,588,400 + BWI76_RS07505 0.88 -1.2 1,588,419 + BWI76_RS07505 0.88 -0.6 1,588,639 + -0.6 1,588,679 + +0.0 1,588,687 - +1.5 1,588,804 - -0.2 1,588,880 + -0.1 1,589,081 - BWI76_RS07510 0.17 -2.2 1,589,166 + BWI76_RS07510 0.29 -1.0 1,589,166 + BWI76_RS07510 0.29 -0.2 1,589,233 + BWI76_RS07510 0.39 -0.2 1,589,691 + -0.0 1,589,716 - +0.5 1,589,732 - -0.8 1,589,846 + BWI76_RS07515 0.11 +0.0 1,589,991 - BWI76_RS07515 0.24 +0.2 1,590,009 - BWI76_RS07515 0.25 +0.5 1,590,213 - BWI76_RS07515 0.44 +0.2 1,590,588 + BWI76_RS07515 0.77 +0.7
Or see this region's nucleotide sequence