Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06520 and BWI76_RS06525 are separated by 316 nucleotides BWI76_RS06525 and BWI76_RS06530 are separated by 132 nucleotides
BWI76_RS06520: BWI76_RS06520 - trigger factor, at 1,368,872 to 1,370,170
_RS06520
BWI76_RS06525: BWI76_RS06525 - ATP-dependent Clp protease proteolytic subunit, at 1,370,487 to 1,371,110
_RS06525
BWI76_RS06530: BWI76_RS06530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,371,243 to 1,372,517
_RS06530
Position (kb)
1370
1371
1372 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1369.782 kb on - strand, within BWI76_RS06520 at 1369.865 kb on - strand, within BWI76_RS06520 at 1369.900 kb on - strand, within BWI76_RS06520 at 1370.142 kb on + strand at 1370.182 kb on + strand at 1370.182 kb on + strand at 1370.369 kb on + strand at 1370.379 kb on - strand at 1370.397 kb on - strand at 1370.402 kb on - strand at 1370.523 kb on + strand at 1370.651 kb on + strand, within BWI76_RS06525 at 1370.854 kb on - strand, within BWI76_RS06525 at 1370.987 kb on - strand, within BWI76_RS06525 at 1371.000 kb on + strand, within BWI76_RS06525 at 1371.007 kb on + strand, within BWI76_RS06525 at 1371.232 kb on + strand at 1371.276 kb on + strand at 1371.435 kb on - strand, within BWI76_RS06530 at 1371.570 kb on - strand, within BWI76_RS06530 at 1371.705 kb on + strand, within BWI76_RS06530 at 1371.748 kb on - strand, within BWI76_RS06530
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,369,782 - BWI76_RS06520 0.70 +1.1 1,369,865 - BWI76_RS06520 0.76 +0.1 1,369,900 - BWI76_RS06520 0.79 +0.5 1,370,142 + -1.3 1,370,182 + +0.0 1,370,182 + +0.7 1,370,369 + +0.8 1,370,379 - -0.6 1,370,397 - -0.8 1,370,402 - +0.1 1,370,523 + -2.9 1,370,651 + BWI76_RS06525 0.26 -1.5 1,370,854 - BWI76_RS06525 0.59 -2.4 1,370,987 - BWI76_RS06525 0.80 -2.5 1,371,000 + BWI76_RS06525 0.82 -5.4 1,371,007 + BWI76_RS06525 0.83 -3.5 1,371,232 + -2.3 1,371,276 + -2.2 1,371,435 - BWI76_RS06530 0.15 +0.5 1,371,570 - BWI76_RS06530 0.26 -2.4 1,371,705 + BWI76_RS06530 0.36 -2.3 1,371,748 - BWI76_RS06530 0.40 -1.2
Or see this region's nucleotide sequence