Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01900 and BWI76_RS01905 are separated by 140 nucleotides BWI76_RS01905 and BWI76_RS01910 are separated by 177 nucleotides
BWI76_RS01900: BWI76_RS01900 - tRNA-dihydrouridine synthase A, at 386,840 to 387,835
_RS01900
BWI76_RS01905: BWI76_RS01905 - envelope stress response protein PspG, at 387,976 to 388,218
_RS01905
BWI76_RS01910: BWI76_RS01910 - quinone oxidoreductase, at 388,396 to 389,379
_RS01910
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1 at 387.444 kb on - strand, within BWI76_RS01900 at 387.475 kb on - strand, within BWI76_RS01900 at 387.505 kb on + strand, within BWI76_RS01900 at 387.657 kb on + strand, within BWI76_RS01900 at 387.675 kb on + strand, within BWI76_RS01900 at 387.795 kb on + strand at 387.911 kb on + strand at 388.065 kb on - strand, within BWI76_RS01905 at 388.072 kb on + strand, within BWI76_RS01905 at 388.292 kb on + strand at 388.337 kb on - strand at 388.337 kb on - strand at 388.379 kb on - strand at 388.380 kb on - strand at 388.677 kb on - strand, within BWI76_RS01910 at 388.735 kb on + strand, within BWI76_RS01910 at 388.795 kb on - strand, within BWI76_RS01910 at 388.859 kb on + strand, within BWI76_RS01910 at 388.905 kb on + strand, within BWI76_RS01910 at 388.917 kb on + strand, within BWI76_RS01910 at 388.925 kb on - strand, within BWI76_RS01910 at 388.988 kb on + strand, within BWI76_RS01910 at 388.997 kb on + strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 389.098 kb on - strand, within BWI76_RS01910 at 389.107 kb on - strand, within BWI76_RS01910 at 389.132 kb on - strand, within BWI76_RS01910
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 387,444 - BWI76_RS01900 0.61 +0.4 387,475 - BWI76_RS01900 0.64 -0.0 387,505 + BWI76_RS01900 0.67 -1.1 387,657 + BWI76_RS01900 0.82 -0.4 387,675 + BWI76_RS01900 0.84 -0.6 387,795 + -0.7 387,911 + +0.4 388,065 - BWI76_RS01905 0.37 +1.1 388,072 + BWI76_RS01905 0.40 +0.6 388,292 + -0.7 388,337 - +0.1 388,337 - -1.0 388,379 - -0.1 388,380 - +0.2 388,677 - BWI76_RS01910 0.29 +0.3 388,735 + BWI76_RS01910 0.34 -0.5 388,795 - BWI76_RS01910 0.41 -0.9 388,859 + BWI76_RS01910 0.47 -0.4 388,905 + BWI76_RS01910 0.52 -0.5 388,917 + BWI76_RS01910 0.53 -0.7 388,925 - BWI76_RS01910 0.54 -0.3 388,988 + BWI76_RS01910 0.60 -0.6 388,997 + BWI76_RS01910 0.61 -0.4 388,998 - BWI76_RS01910 0.61 -0.3 388,998 - BWI76_RS01910 0.61 +0.1 389,098 - BWI76_RS01910 0.71 +0.1 389,107 - BWI76_RS01910 0.72 +0.5 389,132 - BWI76_RS01910 0.75 -0.5
Or see this region's nucleotide sequence