Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005723

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
2,021,236	+				+0.3
2,021,237	-				-0.9
2,021,237	-				-0.5
2,021,237	-				-0.6
2,021,237	-				-0.8
2,021,254	+				-0.2
2,021,335	+				+0.8
2,021,336	-				+0.3
2,021,364	+				+2.1
2,021,364	+				+2.5
2,021,365	-				-0.5
2,021,365	-				+0.8
2,021,365	-				-3.2
2,021,365	-				-1.4
2,021,370	+				+0.3
2,021,371	-				-0.7
2,021,371	-				-0.7
2,021,371	-				+1.3
2,021,378	+				+0.3
2,021,378	+				+0.1
2,021,379	-				+0.3
2,021,379	-				+0.8
2,021,379	-				-2.2
2,021,379	-				-0.2
2,021,388	+				+1.8
2,021,388	+				+0.3
2,021,389	-				+1.3
2,021,389	-				-1.7
2,021,392	+				-0.7
2,021,392	+				+0.3
2,021,392	+				-1.2
2,021,392	+				-0.9
2,021,392	+				-1.0
2,021,392	+				+2.3
2,021,392	+				-1.5
2,021,393	-				-3.3
2,021,410	-				-0.8
2,021,449	+				-0.7
2,021,449	+				+0.9
2,021,450	-				+0.4
2,021,450	-				+0.8
2,021,450	-				-1.8
2,021,450	-				+0.6
2,021,560	-				+2.5
2,021,560	-				+1.8
2,021,595	+		ABIE53_005722	0.13	+0.0
2,021,595	+		ABIE53_005722	0.13	-3.2
2,021,596	-		ABIE53_005722	0.13	-2.7
2,021,596	-		ABIE53_005722	0.13	+0.3
2,021,596	-		ABIE53_005722	0.13	-1.2
2,021,596	-		ABIE53_005722	0.13	-1.2
2,021,646	+		ABIE53_005722	0.21	-1.0
2,021,646	+		ABIE53_005722	0.21	-2.1
2,021,646	+		ABIE53_005722	0.21	+0.6
2,021,647	-		ABIE53_005722	0.21	+0.0
2,021,647	-		ABIE53_005722	0.21	-0.6
2,021,709	+		ABIE53_005722	0.31	-0.5
2,021,710	-		ABIE53_005722	0.31	-0.9
2,021,710	-		ABIE53_005722	0.31	-1.7
2,021,710	-		ABIE53_005722	0.31	-1.0
2,021,710	-		ABIE53_005722	0.31	-1.8
2,021,710	-		ABIE53_005722	0.31	-1.7
2,021,710	-		ABIE53_005722	0.31	-2.5
2,021,710	-		ABIE53_005722	0.31	-3.6
2,021,840	+		ABIE53_005722	0.51	-1.0
2,021,840	+		ABIE53_005722	0.51	+0.3
2,021,841	-		ABIE53_005722	0.51	+2.3
2,021,841	-		ABIE53_005722	0.51	-0.2
2,021,958	+		ABIE53_005722	0.69	+2.4
2,021,958	+		ABIE53_005722	0.69	-0.2
2,021,958	+		ABIE53_005722	0.69	-1.3
2,021,958	+		ABIE53_005722	0.69	-0.9
2,021,958	+		ABIE53_005722	0.69	+0.8
2,021,958	+		ABIE53_005722	0.69	-4.3
2,021,959	-		ABIE53_005722	0.69	-2.7
2,021,959	-		ABIE53_005722	0.69	-1.1
2,021,959	-		ABIE53_005722	0.69	-0.7
2,021,959	-		ABIE53_005722	0.69	-2.2
2,021,959	-		ABIE53_005722	0.69	-0.5
2,021,959	-		ABIE53_005722	0.69	-1.0
2,021,966	+		ABIE53_005722	0.71	-0.5
2,021,966	+		ABIE53_005722	0.71	-1.4
2,021,966	+		ABIE53_005722	0.71	-1.5
2,021,966	+		ABIE53_005722	0.71	-2.5
2,021,966	+		ABIE53_005722	0.71	+0.3
2,021,966	+		ABIE53_005722	0.71	-2.4
2,021,966	+		ABIE53_005722	0.71	+0.0
2,021,966	+		ABIE53_005722	0.71	-0.8
2,021,966	+		ABIE53_005722	0.71	-1.8
2,021,967	-		ABIE53_005722	0.71	-2.5
2,021,967	-		ABIE53_005722	0.71	-0.4
2,021,967	-		ABIE53_005722	0.71	-0.5
2,021,967	-		ABIE53_005722	0.71	-2.0
2,021,967	-		ABIE53_005722	0.71	+4.4
2,021,967	-		ABIE53_005722	0.71	-1.9
2,021,967	-		ABIE53_005722	0.71	-1.9
2,021,967	-		ABIE53_005722	0.71	+0.8
2,021,967	-		ABIE53_005722	0.71	+0.3
2,022,081	+		ABIE53_005722	0.88	-1.5
2,022,081	+		ABIE53_005722	0.88	-0.7
2,022,081	+		ABIE53_005722	0.88	-0.4
2,022,081	+		ABIE53_005722	0.88	-0.5
2,022,081	+		ABIE53_005722	0.88	-1.7
2,022,081	+		ABIE53_005722	0.88	-0.9
2,022,081	+		ABIE53_005722	0.88	+0.9
2,022,081	+		ABIE53_005722	0.88	-0.6
2,022,081	+		ABIE53_005722	0.88	-0.2
2,022,082	-		ABIE53_005722	0.89	-3.2
2,022,082	-		ABIE53_005722	0.89	+0.8
2,022,082	-		ABIE53_005722	0.89	+1.6
2,022,082	-		ABIE53_005722	0.89	-1.6
2,022,082	-		ABIE53_005722	0.89	+1.3
2,022,082	-		ABIE53_005722	0.89	-1.5
2,022,120	+				+0.0
2,022,120	+				-1.5
2,022,121	-				-1.1
2,022,215	+		ABIE53_005723	0.13	-2.1
2,022,215	+		ABIE53_005723	0.13	-1.5
2,022,215	+		ABIE53_005723	0.13	-0.8
2,022,231	-		ABIE53_005723	0.21	-1.5
2,022,231	-		ABIE53_005723	0.21	-1.9
2,022,240	+		ABIE53_005723	0.25	-0.6
2,022,240	+		ABIE53_005723	0.25	-0.8
2,022,240	+		ABIE53_005723	0.25	+0.4
2,022,241	-		ABIE53_005723	0.26	+1.2
2,022,241	-		ABIE53_005723	0.26	+0.3
2,022,241	-		ABIE53_005723	0.26	-1.0
2,022,241	-		ABIE53_005723	0.26	-0.7
2,022,287	+		ABIE53_005723	0.49	-0.1
2,022,287	+		ABIE53_005723	0.49	-0.7
2,022,287	+		ABIE53_005723	0.49	+0.4
2,022,287	+		ABIE53_005723	0.49	-2.8
2,022,288	-		ABIE53_005723	0.49	-1.3
2,022,288	-		ABIE53_005723	0.49	+0.8
2,022,288	-		ABIE53_005723	0.49	-1.7
2,022,288	-		ABIE53_005723	0.49	+1.2
2,022,397	+				-0.7
2,022,397	+				-1.7
2,022,398	-				-0.5
2,022,398	-				-1.1
2,022,498	+		ABIE53_005724	0.27	+0.2
2,022,498	+		ABIE53_005724	0.27	-0.4
2,022,498	+		ABIE53_005724	0.27	-2.2
2,022,498	+		ABIE53_005724	0.27	-1.2
2,022,498	+		ABIE53_005724	0.27	-0.8
2,022,498	+		ABIE53_005724	0.27	-1.2
2,022,498	+		ABIE53_005724	0.27	-0.7
2,022,499	-		ABIE53_005724	0.27	-0.5
2,022,499	-		ABIE53_005724	0.27	+0.2
2,022,499	-		ABIE53_005724	0.27	+0.7
2,022,499	-		ABIE53_005724	0.27	-0.7
2,022,499	-		ABIE53_005724	0.27	-0.1
2,022,500	+		ABIE53_005724	0.28	+1.1
2,022,500	+		ABIE53_005724	0.28	-0.7
2,022,500	+		ABIE53_005724	0.28	-0.2
2,022,500	+		ABIE53_005724	0.28	+0.0
2,022,500	+		ABIE53_005724	0.28	+0.9
2,022,500	+		ABIE53_005724	0.28	+2.1
2,022,500	+		ABIE53_005724	0.28	-1.0
2,022,500	+		ABIE53_005724	0.28	-1.2
2,022,500	+		ABIE53_005724	0.28	-0.1
2,022,500	+		ABIE53_005724	0.28	-1.9
2,022,500	+		ABIE53_005724	0.28	-3.0
2,022,500	+		ABIE53_005724	0.28	-2.0
2,022,500	+		ABIE53_005724	0.28	+0.8
2,022,500	+		ABIE53_005724	0.28	+1.1
2,022,500	+		ABIE53_005724	0.28	-2.1
2,022,500	+		ABIE53_005724	0.28	-1.0
2,022,500	+		ABIE53_005724	0.28	-0.2
2,022,500	+		ABIE53_005724	0.28	-0.8
2,022,500	+		ABIE53_005724	0.28	-0.7
2,022,501	-		ABIE53_005724	0.28	+1.3
2,022,501	-		ABIE53_005724	0.28	-0.2
2,022,501	-		ABIE53_005724	0.28	+0.6
2,022,501	-		ABIE53_005724	0.28	-1.4
2,022,501	-		ABIE53_005724	0.28	-1.0
2,022,501	-		ABIE53_005724	0.28	-0.5
2,022,501	-		ABIE53_005724	0.28	+0.8
2,022,501	-		ABIE53_005724	0.28	+0.5
2,022,501	-		ABIE53_005724	0.28	+0.3
2,022,501	-		ABIE53_005724	0.28	-0.8
2,022,548	+		ABIE53_005724	0.43	-1.0
2,022,548	+		ABIE53_005724	0.43	-2.7
2,022,549	-		ABIE53_005724	0.43	-1.0
2,022,585	+		ABIE53_005724	0.54	-2.1
2,022,585	+		ABIE53_005724	0.54	+0.6
2,022,585	+		ABIE53_005724	0.54	-0.5
2,022,585	+		ABIE53_005724	0.54	+1.0
2,022,585	+		ABIE53_005724	0.54	+1.3
2,022,585	+		ABIE53_005724	0.54	-1.5
2,022,585	+		ABIE53_005724	0.54	-2.8
2,022,586	-		ABIE53_005724	0.55	-1.9
2,022,586	-		ABIE53_005724	0.55	+0.3
2,022,762	+				-1.5
2,022,762	+				-0.5
2,022,763	-				-0.5
2,022,799	+				-0.2
2,022,799	+				-0.2
2,022,837	+				-2.8
2,022,838	-				+0.8
2,022,838	-				+0.6
2,022,843	+				-1.8
2,022,843	+				-2.7
2,022,843	+				-1.2
2,022,843	+				-0.4
2,022,844	-				-0.3
2,022,844	-				+0.0
2,022,850	+				+1.3
2,022,850	+				+0.0
2,022,973	+				-2.4
2,022,973	+				+0.0
2,023,318	-		ABIE53_005725	0.26	+2.3
2,023,320	+		ABIE53_005725	0.26	+0.3
2,023,320	+		ABIE53_005725	0.26	-1.4
2,023,320	+		ABIE53_005725	0.26	-2.2
2,023,320	+		ABIE53_005725	0.26	-0.1
2,023,320	+		ABIE53_005725	0.26	-0.5
2,023,321	-		ABIE53_005725	0.26	-0.5
2,023,321	-		ABIE53_005725	0.26	+0.3
2,023,321	-		ABIE53_005725	0.26	-1.8
2,023,321	-		ABIE53_005725	0.26	-1.6