Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003057

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
3,451,340	+		ABIE53_003055	0.48	-2.4
3,451,340	+		ABIE53_003055	0.48	-0.8
3,451,340	+		ABIE53_003055	0.48	-2.2
3,451,340	+		ABIE53_003055	0.48	+0.5
3,451,340	+		ABIE53_003055	0.48	-1.3
3,451,340	+		ABIE53_003055	0.48	-2.1
3,451,340	+		ABIE53_003055	0.48	-1.4
3,451,340	+		ABIE53_003055	0.48	-0.8
3,451,340	+		ABIE53_003055	0.48	-1.5
3,451,340	+		ABIE53_003055	0.48	-1.1
3,451,341	-		ABIE53_003055	0.48	-0.8
3,451,341	-		ABIE53_003055	0.48	-1.9
3,451,341	-		ABIE53_003055	0.48	-1.3
3,451,341	-		ABIE53_003055	0.48	+0.2
3,451,341	-		ABIE53_003055	0.48	-2.2
3,451,341	-		ABIE53_003055	0.48	-0.3
3,451,341	-		ABIE53_003055	0.48	-3.7
3,451,341	-		ABIE53_003055	0.48	+1.1
3,451,367	+		ABIE53_003055	0.51	+0.3
3,451,367	+		ABIE53_003055	0.51	-0.4
3,451,367	+		ABIE53_003055	0.51	-0.7
3,451,367	+		ABIE53_003055	0.51	+0.9
3,451,367	+		ABIE53_003055	0.51	-1.9
3,451,367	+		ABIE53_003055	0.51	+0.8
3,451,368	-		ABIE53_003055	0.51	+1.5
3,451,368	-		ABIE53_003055	0.51	-1.9
3,451,368	-		ABIE53_003055	0.51	-0.5
3,451,368	-		ABIE53_003055	0.51	-2.5
3,451,368	-		ABIE53_003055	0.51	-0.3
3,451,370	+		ABIE53_003055	0.51	-0.3
3,451,371	-		ABIE53_003055	0.51	-2.2
3,451,406	+		ABIE53_003055	0.55	+1.2
3,451,406	+		ABIE53_003055	0.55	+0.4
3,451,406	+		ABIE53_003055	0.55	+0.0
3,451,406	+		ABIE53_003055	0.55	-0.5
3,451,406	+		ABIE53_003055	0.55	-1.1
3,451,407	-		ABIE53_003055	0.55	+0.3
3,451,407	-		ABIE53_003055	0.55	+1.8
3,451,407	-		ABIE53_003055	0.55	-0.8
3,451,407	-		ABIE53_003055	0.55	-1.4
3,451,407	-		ABIE53_003055	0.55	-0.9
3,451,407	-		ABIE53_003055	0.55	+0.7
3,451,407	-		ABIE53_003055	0.55	+0.1
3,451,454	+		ABIE53_003055	0.60	+1.7
3,451,454	+		ABIE53_003055	0.60	-0.3
3,451,454	+		ABIE53_003055	0.60	-2.1
3,451,454	+		ABIE53_003055	0.60	-0.7
3,451,454	+		ABIE53_003055	0.60	+0.1
3,451,454	+		ABIE53_003055	0.60	+0.7
3,451,454	+		ABIE53_003055	0.60	+0.7
3,451,454	+		ABIE53_003055	0.60	+1.4
3,451,454	+		ABIE53_003055	0.60	+0.8
3,451,455	-		ABIE53_003055	0.60	-2.9
3,451,455	-		ABIE53_003055	0.60	-1.4
3,451,455	-		ABIE53_003055	0.60	-0.1
3,451,458	+		ABIE53_003055	0.60	+0.0
3,451,458	+		ABIE53_003055	0.60	+0.7
3,451,458	+		ABIE53_003055	0.60	+1.1
3,451,458	+		ABIE53_003055	0.60	-1.7
3,451,458	+		ABIE53_003055	0.60	+0.3
3,451,458	+		ABIE53_003055	0.60	-1.4
3,451,458	+		ABIE53_003055	0.60	+1.2
3,451,458	+		ABIE53_003055	0.60	+2.7
3,451,458	+		ABIE53_003055	0.60	-0.8
3,451,458	+		ABIE53_003055	0.60	+0.2
3,451,458	+		ABIE53_003055	0.60	-1.2
3,451,458	+		ABIE53_003055	0.60	+1.0
3,451,458	+		ABIE53_003055	0.60	+1.7
3,451,458	+		ABIE53_003055	0.60	-0.3
3,451,458	+		ABIE53_003055	0.60	-0.3
3,451,459	-		ABIE53_003055	0.60	-0.7
3,451,459	-		ABIE53_003055	0.60	+1.1
3,451,459	-		ABIE53_003055	0.60	-0.5
3,451,459	-		ABIE53_003055	0.60	+1.5
3,451,459	-		ABIE53_003055	0.60	-2.2
3,451,459	-		ABIE53_003055	0.60	+2.1
3,451,459	-		ABIE53_003055	0.60	-1.1
3,451,459	-		ABIE53_003055	0.60	+0.3
3,451,459	-		ABIE53_003055	0.60	-0.8
3,451,557	+		ABIE53_003055	0.70	-0.2
3,451,557	+		ABIE53_003055	0.70	+2.1
3,451,557	+		ABIE53_003055	0.70	+3.3
3,451,558	-		ABIE53_003055	0.70	-2.2
3,451,558	-		ABIE53_003055	0.70	+0.6
3,451,558	-		ABIE53_003055	0.70	-1.9
3,451,578	+		ABIE53_003055	0.72	-0.2
3,451,578	+		ABIE53_003055	0.72	-0.3
3,451,579	-		ABIE53_003055	0.72	-0.1
3,451,579	-		ABIE53_003055	0.72	+0.3
3,451,588	+		ABIE53_003055	0.73	-0.7
3,451,588	+		ABIE53_003055	0.73	-1.2
3,451,589	-		ABIE53_003055	0.73	+1.7
3,451,869	-				-0.0
3,451,869	-				-1.4
3,452,038	-		ABIE53_003056	0.34	+2.7
3,452,067	+		ABIE53_003056	0.41	+0.2
3,452,067	+		ABIE53_003056	0.41	-0.9
3,452,067	+		ABIE53_003056	0.41	+0.1
3,452,067	+		ABIE53_003056	0.41	-1.7
3,452,067	+		ABIE53_003056	0.41	-1.0
3,452,067	+		ABIE53_003056	0.41	-2.1
3,452,067	+		ABIE53_003056	0.41	-1.3
3,452,067	+		ABIE53_003056	0.41	-1.7
3,452,067	+		ABIE53_003056	0.41	+0.3
3,452,067	+		ABIE53_003056	0.41	+0.7
3,452,067	+		ABIE53_003056	0.41	-1.9
3,452,068	-		ABIE53_003056	0.41	-1.1
3,452,068	-		ABIE53_003056	0.41	+4.0
3,452,068	-		ABIE53_003056	0.41	-0.7
3,452,068	-		ABIE53_003056	0.41	+0.7
3,452,068	-		ABIE53_003056	0.41	+1.0
3,452,068	-		ABIE53_003056	0.41	+0.5
3,452,068	-		ABIE53_003056	0.41	+0.3
3,452,068	-		ABIE53_003056	0.41	-0.7
3,452,068	-		ABIE53_003056	0.41	+1.1
3,452,068	-		ABIE53_003056	0.41	-1.2
3,452,068	-		ABIE53_003056	0.41	+1.0
3,452,068	-		ABIE53_003056	0.41	+0.1
3,452,068	-		ABIE53_003056	0.41	+0.7
3,452,068	-		ABIE53_003056	0.41	-1.9
3,452,068	-		ABIE53_003056	0.41	-1.4
3,452,069	+		ABIE53_003056	0.41	-1.3
3,452,069	+		ABIE53_003056	0.41	-1.0
3,452,069	+		ABIE53_003056	0.41	-2.6
3,452,069	+		ABIE53_003056	0.41	+0.1
3,452,069	+		ABIE53_003056	0.41	+1.3
3,452,069	+		ABIE53_003056	0.41	+0.2
3,452,070	-		ABIE53_003056	0.42	-0.3
3,452,070	-		ABIE53_003056	0.42	-0.1
3,452,070	-		ABIE53_003056	0.42	-1.0
3,452,142	+		ABIE53_003056	0.59	+0.3
3,452,142	+		ABIE53_003056	0.59	-2.1
3,452,142	+		ABIE53_003056	0.59	-1.0
3,452,143	-		ABIE53_003056	0.59	-3.1
3,452,143	-		ABIE53_003056	0.59	+2.2
3,452,143	-		ABIE53_003056	0.59	+1.3
3,452,143	-		ABIE53_003056	0.59	+1.1
3,452,148	+		ABIE53_003056	0.60	+0.3
3,452,149	-		ABIE53_003056	0.60	+1.3
3,452,149	-		ABIE53_003056	0.60	-0.9
3,452,149	-		ABIE53_003056	0.60	-0.4
3,452,149	-		ABIE53_003056	0.60	+0.7
3,452,164	-		ABIE53_003056	0.64	-0.9
3,452,361	+				-0.9
3,452,361	+				-0.6
3,452,361	+				+0.5
3,452,361	+				-0.1
3,452,361	+				-1.8
3,452,361	+				+1.0
3,452,361	+				-0.5
3,452,361	+				+0.3
3,452,361	+				-0.1
3,452,361	+				+0.7
3,452,361	+				+0.2
3,452,361	+				+2.1
3,452,361	+				-1.5
3,452,361	+				+1.1
3,452,362	-				+0.7
3,452,362	-				-0.3
3,452,362	-				-1.1
3,452,362	-				-1.2
3,452,362	-				+1.3
3,452,362	-				-0.3
3,452,362	-				-1.3
3,452,363	+				+0.7
3,452,363	+				-1.2
3,452,363	+				-0.3
3,452,363	+				-1.8
3,452,363	+				+0.7
3,452,363	+				-0.8
3,452,363	+				-0.5
3,452,363	+				-1.0
3,452,363	+				+0.1
3,452,363	+				-0.8
3,452,363	+				-2.2
3,452,363	+				+0.3
3,452,363	+				-1.1
3,452,363	+				-2.4
3,452,363	+				+0.1
3,452,363	+				-0.9
3,452,363	+				-1.0
3,452,363	+				+0.5
3,452,363	+				+3.0
3,452,363	+				+0.4
3,452,363	+				-0.2
3,452,364	-				-0.3
3,452,364	-				-0.9
3,452,364	-				-0.3
3,452,364	-				+2.3
3,452,364	-				+0.2
3,452,364	-				-2.8
3,452,364	-				+2.7
3,452,364	-				-1.7
3,452,364	-				-0.5
3,452,364	-				-1.4
3,452,364	-				-1.3
3,452,364	-				-0.1
3,452,364	-				+0.6
3,452,364	-				+0.7
3,452,364	-				-1.2
3,452,364	-				+0.2
3,452,364	-				-0.3
3,452,364	-				+0.7
3,452,364	-				-1.8
3,452,364	-				-0.1
3,452,364	-				-0.1
3,452,364	-				-0.9
3,452,408	+		ABIE53_003057	0.15	-2.0
3,452,408	+		ABIE53_003057	0.15	-0.8
3,452,408	+		ABIE53_003057	0.15	+0.3
3,452,408	+		ABIE53_003057	0.15	+1.5
3,452,408	+		ABIE53_003057	0.15	-1.3
3,452,409	-		ABIE53_003057	0.15	-0.3
3,452,452	+		ABIE53_003057	0.21	-0.3
3,452,452	+		ABIE53_003057	0.21	-1.5
3,452,452	+		ABIE53_003057	0.21	-0.5
3,452,452	+		ABIE53_003057	0.21	-0.8
3,452,452	+		ABIE53_003057	0.21	-0.7
3,452,452	+		ABIE53_003057	0.21	+1.6
3,452,452	+		ABIE53_003057	0.21	-1.0
3,452,452	+		ABIE53_003057	0.21	+0.4
3,452,452	+		ABIE53_003057	0.21	-0.5
3,452,453	-		ABIE53_003057	0.22	+0.3
3,452,453	-		ABIE53_003057	0.22	-1.2
3,452,453	-		ABIE53_003057	0.22	+2.7
3,452,453	-		ABIE53_003057	0.22	+0.7
3,452,453	-		ABIE53_003057	0.22	+0.2
3,452,453	-		ABIE53_003057	0.22	-0.1
3,452,453	-		ABIE53_003057	0.22	+1.4
3,452,453	-		ABIE53_003057	0.22	-2.2
3,452,453	-		ABIE53_003057	0.22	-0.5
3,452,453	-		ABIE53_003057	0.22	-0.1
3,452,453	-		ABIE53_003057	0.22	-1.4
3,452,453	-		ABIE53_003057	0.22	-0.2
3,452,453	-		ABIE53_003057	0.22	-1.9
3,452,453	-		ABIE53_003057	0.22	+2.3
3,452,453	-		ABIE53_003057	0.22	-0.8
3,452,453	-		ABIE53_003057	0.22	-2.1
3,452,453	-		ABIE53_003057	0.22	-0.0
3,452,467	-		ABIE53_003057	0.24	-2.3
3,452,467	-		ABIE53_003057	0.24	+0.7
3,452,657	+		ABIE53_003057	0.52	-0.2
3,452,657	+		ABIE53_003057	0.52	+0.6
3,452,657	+		ABIE53_003057	0.52	+0.5
3,452,657	+		ABIE53_003057	0.52	-0.6
3,452,657	+		ABIE53_003057	0.52	-1.1
3,452,658	-		ABIE53_003057	0.53	+0.3
3,452,658	-		ABIE53_003057	0.53	+1.1
3,452,658	-		ABIE53_003057	0.53	-1.6
3,452,658	-		ABIE53_003057	0.53	+1.0
3,452,658	-		ABIE53_003057	0.53	+1.1
3,452,658	-		ABIE53_003057	0.53	-1.7
3,452,658	-		ABIE53_003057	0.53	-1.1
3,452,658	-		ABIE53_003057	0.53	-1.1
3,452,658	-		ABIE53_003057	0.53	-0.5
3,452,725	+		ABIE53_003057	0.63	-1.8
3,452,726	-		ABIE53_003057	0.63	+0.3
3,452,732	+		ABIE53_003057	0.64	-2.2
3,452,732	+		ABIE53_003057	0.64	+1.0
3,452,732	+		ABIE53_003057	0.64	-1.2
3,452,733	-		ABIE53_003057	0.64	+0.0
3,452,733	-		ABIE53_003057	0.64	-0.9
3,452,733	-		ABIE53_003057	0.64	+0.9
3,452,733	-		ABIE53_003057	0.64	-0.1
3,452,733	-		ABIE53_003057	0.64	+1.8
3,452,733	-		ABIE53_003057	0.64	+3.3
3,452,733	-		ABIE53_003057	0.64	+1.1
3,452,765	+		ABIE53_003057	0.69	+1.4
3,452,766	-		ABIE53_003057	0.69	+0.7
3,452,766	-		ABIE53_003057	0.69	-2.2
3,452,831	+		ABIE53_003057	0.79	-0.8
3,452,831	+		ABIE53_003057	0.79	-0.4
3,452,831	+		ABIE53_003057	0.79	+0.3
3,452,831	+		ABIE53_003057	0.79	-0.1
3,452,831	+		ABIE53_003057	0.79	-0.3
3,452,831	+		ABIE53_003057	0.79	-2.8
3,452,831	+		ABIE53_003057	0.79	-1.7
3,452,831	+		ABIE53_003057	0.79	+1.9
3,452,831	+		ABIE53_003057	0.79	-0.7
3,452,832	-		ABIE53_003057	0.79	-0.6
3,452,832	-		ABIE53_003057	0.79	-0.6
3,452,832	-		ABIE53_003057	0.79	+0.3
3,452,832	-		ABIE53_003057	0.79	-0.5
3,452,832	-		ABIE53_003057	0.79	+1.0
3,452,832	-		ABIE53_003057	0.79	+0.5
3,452,832	-		ABIE53_003057	0.79	+1.1
3,452,964	+				+0.3
3,452,964	+				+1.1
3,452,965	-				+1.1
3,452,965	-				+2.1
3,452,965	-				-0.4
3,452,965	-				-0.4
3,452,965	-				-1.2
3,452,989	-				-0.1
3,453,002	+				-0.1
3,453,002	+				-0.7
3,453,003	-				+0.2
3,453,003	-				-0.0
3,453,003	-				-0.7
3,453,102	+		ABIE53_003058	0.13	+2.4
3,453,102	+		ABIE53_003058	0.13	-2.6
3,453,230	+		ABIE53_003058	0.26	-1.0
3,453,230	+		ABIE53_003058	0.26	+2.1
3,453,230	+		ABIE53_003058	0.26	+1.7
3,453,230	+		ABIE53_003058	0.26	+0.7
3,453,230	+		ABIE53_003058	0.26	-0.0
3,453,230	+		ABIE53_003058	0.26	-0.3
3,453,230	+		ABIE53_003058	0.26	+0.9
3,453,230	+		ABIE53_003058	0.26	+0.3
3,453,231	-		ABIE53_003058	0.26	-1.5
3,453,231	-		ABIE53_003058	0.26	+0.1
3,453,231	-		ABIE53_003058	0.26	-0.5
3,453,231	-		ABIE53_003058	0.26	+0.3
3,453,231	-		ABIE53_003058	0.26	-0.9
3,453,231	-		ABIE53_003058	0.26	+1.2
3,453,231	-		ABIE53_003058	0.26	+0.7
3,453,276	+		ABIE53_003058	0.30	-0.7
3,453,369	+		ABIE53_003058	0.39	+5.0
3,453,369	+		ABIE53_003058	0.39	+1.1
3,453,369	+		ABIE53_003058	0.39	+0.1
3,453,369	+		ABIE53_003058	0.39	+0.2
3,453,369	+		ABIE53_003058	0.39	-0.3
3,453,369	+		ABIE53_003058	0.39	+1.2
3,453,369	+		ABIE53_003058	0.39	+2.9
3,453,369	+		ABIE53_003058	0.39	+2.9
3,453,369	+		ABIE53_003058	0.39	+0.1
3,453,369	+		ABIE53_003058	0.39	+2.2
3,453,370	-		ABIE53_003058	0.39	-1.0
3,453,370	-		ABIE53_003058	0.39	+4.3
3,453,370	-		ABIE53_003058	0.39	-1.0
3,453,370	-		ABIE53_003058	0.39	-0.3
3,453,370	-		ABIE53_003058	0.39	-1.0
3,453,370	-		ABIE53_003058	0.39	+0.7
3,453,370	-		ABIE53_003058	0.39	+0.9
3,453,370	-		ABIE53_003058	0.39	+0.1
3,453,370	-		ABIE53_003058	0.39	+1.0
3,453,370	-		ABIE53_003058	0.39	-0.6
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