Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003054

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
3,449,237	-				+0.9
3,449,317	-				-1.3
3,449,317	-				+0.6
3,449,369	+				-1.6
3,449,369	+				-1.2
3,449,369	+				-1.4
3,449,369	+				+1.7
3,449,370	-				+0.7
3,449,404	+				-1.3
3,449,404	+				-1.4
3,449,405	-				-1.1
3,449,405	-				+0.7
3,449,405	-				+0.4
3,449,405	-				-0.9
3,449,405	-				-1.1
3,449,405	-				-0.5
3,449,405	-				-1.9
3,449,490	-				-2.3
3,449,684	+		ABIE53_003053	0.40	-0.1
3,449,684	+		ABIE53_003053	0.40	-0.6
3,449,684	+		ABIE53_003053	0.40	-0.1
3,449,685	-		ABIE53_003053	0.40	-1.2
3,449,685	-		ABIE53_003053	0.40	-0.3
3,449,773	+		ABIE53_003053	0.55	-0.3
3,449,774	-		ABIE53_003053	0.55	+0.4
3,449,774	-		ABIE53_003053	0.55	-0.3
3,449,774	-		ABIE53_003053	0.55	-0.4
3,449,876	+		ABIE53_003053	0.71	-0.4
3,449,876	+		ABIE53_003053	0.71	-2.7
3,449,876	+		ABIE53_003053	0.71	-2.2
3,449,876	+		ABIE53_003053	0.71	+0.7
3,449,897	+		ABIE53_003053	0.75	-1.2
3,449,897	+		ABIE53_003053	0.75	-2.1
3,449,898	-		ABIE53_003053	0.75	+0.1
3,449,898	-		ABIE53_003053	0.75	-0.5
3,450,030	-				-0.9
3,450,036	+				-3.2
3,450,037	-				-0.6
3,450,037	-				+0.1
3,450,064	+				-1.7
3,450,064	+				-2.1
3,450,065	-				-0.6
3,450,065	-				+0.7
3,450,065	-				-1.5
3,450,065	-				+1.1
3,450,065	-				+2.7
3,450,065	-				-1.3
3,450,065	-				-0.1
3,450,065	-				-1.5
3,450,083	+				-0.9
3,450,084	-				+0.1
3,450,157	+		ABIE53_003054	0.15	-0.1
3,450,157	+		ABIE53_003054	0.15	+0.6
3,450,157	+		ABIE53_003054	0.15	-1.2
3,450,157	+		ABIE53_003054	0.15	-1.2
3,450,157	+		ABIE53_003054	0.15	-1.9
3,450,157	+		ABIE53_003054	0.15	+0.3
3,450,157	+		ABIE53_003054	0.15	+0.1
3,450,157	+		ABIE53_003054	0.15	+2.1
3,450,157	+		ABIE53_003054	0.15	-2.8
3,450,157	+		ABIE53_003054	0.15	-2.2
3,450,158	-		ABIE53_003054	0.15	+1.1
3,450,158	-		ABIE53_003054	0.15	-1.2
3,450,158	-		ABIE53_003054	0.15	+0.3
3,450,158	-		ABIE53_003054	0.15	+0.7
3,450,158	-		ABIE53_003054	0.15	-1.9
3,450,160	+		ABIE53_003054	0.15	-0.8
3,450,160	+		ABIE53_003054	0.15	-2.0
3,450,160	+		ABIE53_003054	0.15	-0.8
3,450,160	+		ABIE53_003054	0.15	-0.9
3,450,160	+		ABIE53_003054	0.15	-0.1
3,450,160	+		ABIE53_003054	0.15	+0.6
3,450,160	+		ABIE53_003054	0.15	-2.3
3,450,160	+		ABIE53_003054	0.15	+0.1
3,450,160	+		ABIE53_003054	0.15	-0.3
3,450,160	+		ABIE53_003054	0.15	+0.7
3,450,160	+		ABIE53_003054	0.15	-3.0
3,450,160	+		ABIE53_003054	0.15	-0.5
3,450,160	+		ABIE53_003054	0.15	-2.2
3,450,160	+		ABIE53_003054	0.15	-1.3
3,450,160	+		ABIE53_003054	0.15	+1.1
3,450,160	+		ABIE53_003054	0.15	-1.1
3,450,160	+		ABIE53_003054	0.15	-1.7
3,450,160	+		ABIE53_003054	0.15	-2.0
3,450,160	+		ABIE53_003054	0.15	+0.3
3,450,160	+		ABIE53_003054	0.15	+0.2
3,450,160	+		ABIE53_003054	0.15	-0.8
3,450,160	+		ABIE53_003054	0.15	+0.3
3,450,160	+		ABIE53_003054	0.15	-0.3
3,450,160	+		ABIE53_003054	0.15	+0.7
3,450,160	+		ABIE53_003054	0.15	+0.9
3,450,161	-		ABIE53_003054	0.16	+1.1
3,450,161	-		ABIE53_003054	0.16	-1.0
3,450,161	-		ABIE53_003054	0.16	+2.5
3,450,161	-		ABIE53_003054	0.16	+4.0
3,450,161	-		ABIE53_003054	0.16	-2.5
3,450,161	-		ABIE53_003054	0.16	+0.7
3,450,161	-		ABIE53_003054	0.16	+0.6
3,450,161	-		ABIE53_003054	0.16	-0.8
3,450,161	-		ABIE53_003054	0.16	+0.3
3,450,161	-		ABIE53_003054	0.16	+1.8
3,450,161	-		ABIE53_003054	0.16	+0.3
3,450,161	-		ABIE53_003054	0.16	-2.1
3,450,161	-		ABIE53_003054	0.16	-2.7
3,450,161	-		ABIE53_003054	0.16	-0.4
3,450,161	-		ABIE53_003054	0.16	+0.5
3,450,161	-		ABIE53_003054	0.16	-2.3
3,450,161	-		ABIE53_003054	0.16	-1.7
3,450,161	-		ABIE53_003054	0.16	-0.7
3,450,161	-		ABIE53_003054	0.16	-3.4
3,450,161	-		ABIE53_003054	0.16	-0.9
3,450,161	-		ABIE53_003054	0.16	+0.5
3,450,161	-		ABIE53_003054	0.16	-1.9
3,450,297	-		ABIE53_003054	0.34	-0.3
3,450,297	-		ABIE53_003054	0.34	-1.9
3,450,420	+		ABIE53_003054	0.52	+0.3
3,450,420	+		ABIE53_003054	0.52	-2.2
3,450,420	+		ABIE53_003054	0.52	-1.4
3,450,420	+		ABIE53_003054	0.52	+4.4
3,450,420	+		ABIE53_003054	0.52	-1.3
3,450,421	-		ABIE53_003054	0.52	+1.3
3,450,421	-		ABIE53_003054	0.52	-0.1
3,450,421	-		ABIE53_003054	0.52	-0.7
3,450,421	-		ABIE53_003054	0.52	-1.8
3,450,421	-		ABIE53_003054	0.52	-2.1
3,450,421	-		ABIE53_003054	0.52	-2.6
3,450,421	-		ABIE53_003054	0.52	+0.3
3,450,440	+		ABIE53_003054	0.54	-2.1
3,450,484	+		ABIE53_003054	0.60	+1.7
3,450,484	+		ABIE53_003054	0.60	-3.1
3,450,485	-		ABIE53_003054	0.61	-1.9
3,450,485	-		ABIE53_003054	0.61	+1.0
3,450,485	-		ABIE53_003054	0.61	-0.1
3,450,485	-		ABIE53_003054	0.61	+1.3
3,450,570	+		ABIE53_003054	0.72	-0.7
3,450,755	+				-0.2
3,450,756	-				-0.1
3,450,871	+				-0.7
3,450,871	+				-0.1
3,450,871	+				-1.5
3,450,871	+				-0.8
3,450,871	+				-0.9
3,450,872	-				-0.1
3,450,872	-				-0.7
3,450,872	-				-2.1
3,450,872	-				-3.0
3,450,872	-				+0.5
3,450,872	-				-1.9
3,450,872	-				-2.5
3,450,872	-				-1.9
3,450,872	-				-1.8
3,450,872	-				+1.1
3,450,872	-				-0.1
3,450,872	-				-0.9
3,450,872	-				-0.3
3,450,968	+		ABIE53_003055	0.11	+1.1
3,450,968	+		ABIE53_003055	0.11	-0.7
3,450,968	+		ABIE53_003055	0.11	-1.3
3,450,968	+		ABIE53_003055	0.11	+0.7
3,450,969	-		ABIE53_003055	0.11	-2.0
3,450,969	-		ABIE53_003055	0.11	-1.6
3,450,979	-		ABIE53_003055	0.12	-2.3
3,451,010	+		ABIE53_003055	0.15	-0.4
3,451,010	+		ABIE53_003055	0.15	-1.3
3,451,010	+		ABIE53_003055	0.15	+1.5
3,451,011	-		ABIE53_003055	0.15	-0.9
3,451,087	-		ABIE53_003055	0.23	-1.7
3,451,087	-		ABIE53_003055	0.23	+0.7
3,451,214	+		ABIE53_003055	0.36	-0.3
3,451,215	-		ABIE53_003055	0.36	-1.6
3,451,340	+		ABIE53_003055	0.48	-2.4
3,451,340	+		ABIE53_003055	0.48	-0.8
3,451,340	+		ABIE53_003055	0.48	-2.2
3,451,340	+		ABIE53_003055	0.48	+0.5
3,451,340	+		ABIE53_003055	0.48	-1.3
3,451,340	+		ABIE53_003055	0.48	-2.1
3,451,340	+		ABIE53_003055	0.48	-1.4
3,451,340	+		ABIE53_003055	0.48	-0.8
3,451,340	+		ABIE53_003055	0.48	-1.5
3,451,340	+		ABIE53_003055	0.48	-1.1
3,451,341	-		ABIE53_003055	0.48	-0.8
3,451,341	-		ABIE53_003055	0.48	-1.9
3,451,341	-		ABIE53_003055	0.48	-1.3
3,451,341	-		ABIE53_003055	0.48	+0.2
3,451,341	-		ABIE53_003055	0.48	-2.2
3,451,341	-		ABIE53_003055	0.48	-0.3
3,451,341	-		ABIE53_003055	0.48	-3.7
3,451,341	-		ABIE53_003055	0.48	+1.1
3,451,367	+		ABIE53_003055	0.51	+0.3
3,451,367	+		ABIE53_003055	0.51	-0.4
3,451,367	+		ABIE53_003055	0.51	-0.7
3,451,367	+		ABIE53_003055	0.51	+0.9
3,451,367	+		ABIE53_003055	0.51	-1.9
3,451,367	+		ABIE53_003055	0.51	+0.8
3,451,368	-		ABIE53_003055	0.51	+1.5
3,451,368	-		ABIE53_003055	0.51	-1.9
3,451,368	-		ABIE53_003055	0.51	-0.5
3,451,368	-		ABIE53_003055	0.51	-2.5
3,451,368	-		ABIE53_003055	0.51	-0.3
3,451,370	+		ABIE53_003055	0.51	-0.3
3,451,371	-		ABIE53_003055	0.51	-2.2
3,451,406	+		ABIE53_003055	0.55	+1.2
3,451,406	+		ABIE53_003055	0.55	+0.4
3,451,406	+		ABIE53_003055	0.55	+0.0
3,451,406	+		ABIE53_003055	0.55	-0.5
3,451,406	+		ABIE53_003055	0.55	-1.1
3,451,407	-		ABIE53_003055	0.55	+0.3
3,451,407	-		ABIE53_003055	0.55	+1.8
3,451,407	-		ABIE53_003055	0.55	-0.8
3,451,407	-		ABIE53_003055	0.55	-1.4
3,451,407	-		ABIE53_003055	0.55	-0.9
3,451,407	-		ABIE53_003055	0.55	+0.7
3,451,407	-		ABIE53_003055	0.55	+0.1
3,451,454	+		ABIE53_003055	0.60	+1.7
3,451,454	+		ABIE53_003055	0.60	-0.3
3,451,454	+		ABIE53_003055	0.60	-2.1
3,451,454	+		ABIE53_003055	0.60	-0.7
3,451,454	+		ABIE53_003055	0.60	+0.1
3,451,454	+		ABIE53_003055	0.60	+0.7
3,451,454	+		ABIE53_003055	0.60	+0.7
3,451,454	+		ABIE53_003055	0.60	+1.4
3,451,454	+		ABIE53_003055	0.60	+0.8
3,451,455	-		ABIE53_003055	0.60	-2.9
3,451,455	-		ABIE53_003055	0.60	-1.4
3,451,455	-		ABIE53_003055	0.60	-0.1
3,451,458	+		ABIE53_003055	0.60	+0.0
3,451,458	+		ABIE53_003055	0.60	+0.7
3,451,458	+		ABIE53_003055	0.60	+1.1
3,451,458	+		ABIE53_003055	0.60	-1.7
3,451,458	+		ABIE53_003055	0.60	+0.3
3,451,458	+		ABIE53_003055	0.60	-1.4
3,451,458	+		ABIE53_003055	0.60	+1.2
3,451,458	+		ABIE53_003055	0.60	+2.7
3,451,458	+		ABIE53_003055	0.60	-0.8
3,451,458	+		ABIE53_003055	0.60	+0.2
3,451,458	+		ABIE53_003055	0.60	-1.2
3,451,458	+		ABIE53_003055	0.60	+1.0
3,451,458	+		ABIE53_003055	0.60	+1.7
3,451,458	+		ABIE53_003055	0.60	-0.3
3,451,458	+		ABIE53_003055	0.60	-0.3
3,451,459	-		ABIE53_003055	0.60	-0.7
3,451,459	-		ABIE53_003055	0.60	+1.1
3,451,459	-		ABIE53_003055	0.60	-0.5
3,451,459	-		ABIE53_003055	0.60	+1.5
3,451,459	-		ABIE53_003055	0.60	-2.2
3,451,459	-		ABIE53_003055	0.60	+2.1
3,451,459	-		ABIE53_003055	0.60	-1.1
3,451,459	-		ABIE53_003055	0.60	+0.3
3,451,459	-		ABIE53_003055	0.60	-0.8
3,451,557	+		ABIE53_003055	0.70	-0.2
3,451,557	+		ABIE53_003055	0.70	+2.1
3,451,557	+		ABIE53_003055	0.70	+3.3
3,451,558	-		ABIE53_003055	0.70	-2.2
3,451,558	-		ABIE53_003055	0.70	+0.6
3,451,558	-		ABIE53_003055	0.70	-1.9
3,451,578	+		ABIE53_003055	0.72	-0.2
3,451,578	+		ABIE53_003055	0.72	-0.3
3,451,579	-		ABIE53_003055	0.72	-0.1
3,451,579	-		ABIE53_003055	0.72	+0.3
3,451,588	+		ABIE53_003055	0.73	-0.7
3,451,588	+		ABIE53_003055	0.73	-1.2
3,451,589	-		ABIE53_003055	0.73	+1.7