Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001664

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
1,850,252	-		ABIE53_001663	0.60	-2.2
1,850,273	+		ABIE53_001663	0.63	+1.0
1,850,273	+		ABIE53_001663	0.63	-3.0
1,850,273	+		ABIE53_001663	0.63	-0.2
1,850,273	+		ABIE53_001663	0.63	-1.4
1,850,274	-		ABIE53_001663	0.63	-0.1
1,850,274	-		ABIE53_001663	0.63	-0.4
1,850,274	-		ABIE53_001663	0.63	-2.3
1,850,274	-		ABIE53_001663	0.63	+2.3
1,850,274	-		ABIE53_001663	0.63	-0.3
1,850,395	+		ABIE53_001663	0.85	-1.1
1,850,395	+		ABIE53_001663	0.85	-1.3
1,850,395	+		ABIE53_001663	0.85	-0.2
1,850,395	+		ABIE53_001663	0.85	-0.9
1,850,395	+		ABIE53_001663	0.85	-3.4
1,850,396	-		ABIE53_001663	0.85	+0.7
1,850,396	-		ABIE53_001663	0.85	+0.6
1,850,396	-		ABIE53_001663	0.85	-0.4
1,850,396	-		ABIE53_001663	0.85	-1.0
1,850,396	-		ABIE53_001663	0.85	-0.3
1,850,396	-		ABIE53_001663	0.85	-1.0
1,850,396	-		ABIE53_001663	0.85	+0.6
1,850,396	-		ABIE53_001663	0.85	-1.1
1,850,425	+				+2.6
1,850,425	+				-1.4
1,850,426	-				-2.6
1,850,426	-				-0.9
1,850,523	+				-0.2
1,850,523	+				-0.2
1,850,524	-				-1.4
1,850,524	-				+1.9
1,850,524	-				-1.8
1,850,540	+				-2.2
1,850,671	-				-2.7
1,850,671	-				-0.9
1,850,683	+				-0.4
1,850,683	+				-0.6
1,850,688	+				-1.0
1,850,688	+				-1.1
1,850,688	+				-0.2
1,850,689	-				+0.0
1,850,689	-				-0.5
1,850,689	-				-0.2
1,850,689	-				-1.0
1,850,787	+				-0.7
1,850,787	+				+0.1
1,850,787	+				+0.2
1,850,788	-				+1.9
1,850,788	-				+0.0
1,850,788	-				+0.3
1,850,798	+				+0.0
1,850,818	+				+0.5
1,850,818	+				-1.8
1,850,818	+				-1.4
1,850,833	+				+0.7
1,850,834	-				-1.1
1,850,834	-				-0.6
1,850,891	+				+2.1
1,850,902	+				-1.4
1,850,903	-				-0.3
1,850,937	+				+1.0
1,850,938	-				-0.9
1,850,938	-				-2.7
1,850,938	-				+0.3
1,850,948	+				+1.0
1,850,962	+				-0.4
1,850,963	-				+0.0
1,850,963	-				+0.0
1,850,963	-				-1.9
1,850,963	-				-1.0
1,851,017	+				-2.4
1,851,018	-				-0.4
1,851,123	+				-1.2
1,851,123	+				+2.6
1,851,123	+				-1.6
1,851,123	+				-0.7
1,851,123	+				-0.4
1,851,123	+				-1.1
1,851,124	-				-1.1
1,851,124	-				-0.4
1,851,124	-				-3.0
1,851,278	+				-1.2
1,851,278	+				-5.0
1,851,278	+				-2.4
1,851,279	-				-2.4
1,851,348	+		ABIE53_001664	0.11	-0.7
1,851,348	+		ABIE53_001664	0.11	-1.0
1,851,348	+		ABIE53_001664	0.11	+0.3
1,851,348	+		ABIE53_001664	0.11	-2.2
1,851,349	-		ABIE53_001664	0.11	-1.6
1,851,367	+		ABIE53_001664	0.12	-1.9
1,851,367	+		ABIE53_001664	0.12	-0.2
1,851,368	-		ABIE53_001664	0.12	+0.3
1,851,368	-		ABIE53_001664	0.12	+0.0
1,851,402	-		ABIE53_001664	0.13	+1.2
1,851,402	-		ABIE53_001664	0.13	-4.0
1,851,402	-		ABIE53_001664	0.13	-1.9
1,851,402	-		ABIE53_001664	0.13	+1.0
1,851,437	+		ABIE53_001664	0.15	-0.7
1,851,437	+		ABIE53_001664	0.15	-1.4
1,851,438	-		ABIE53_001664	0.15	+0.0
1,851,438	-		ABIE53_001664	0.15	+3.0
1,851,530	+		ABIE53_001664	0.20	+0.0
1,851,530	+		ABIE53_001664	0.20	-2.0
1,851,530	+		ABIE53_001664	0.20	-2.4
1,851,531	-		ABIE53_001664	0.20	-0.9
1,851,531	-		ABIE53_001664	0.20	-0.4
1,851,531	-		ABIE53_001664	0.20	-4.6
1,851,553	-		ABIE53_001664	0.21	-0.2
1,851,553	-		ABIE53_001664	0.21	-1.7
1,851,553	-		ABIE53_001664	0.21	-1.2
1,851,553	-		ABIE53_001664	0.21	-1.6
1,851,614	+		ABIE53_001664	0.24	-4.1
1,851,614	+		ABIE53_001664	0.24	-2.2
1,851,614	+		ABIE53_001664	0.24	-0.2
1,851,614	+		ABIE53_001664	0.24	-0.4
1,851,614	+		ABIE53_001664	0.24	-1.3
1,851,614	+		ABIE53_001664	0.24	-0.4
1,851,614	+		ABIE53_001664	0.24	-1.2
1,851,614	+		ABIE53_001664	0.24	-1.6
1,851,614	+		ABIE53_001664	0.24	+1.6
1,851,614	+		ABIE53_001664	0.24	-1.0
1,851,614	+		ABIE53_001664	0.24	-2.0
1,851,614	+		ABIE53_001664	0.24	-0.2
1,851,615	-		ABIE53_001664	0.24	+0.3
1,851,615	-		ABIE53_001664	0.24	-1.4
1,851,615	-		ABIE53_001664	0.24	+1.6
1,851,615	-		ABIE53_001664	0.24	-1.4
1,851,615	-		ABIE53_001664	0.24	-2.2
1,851,615	-		ABIE53_001664	0.24	-3.1
1,851,615	-		ABIE53_001664	0.24	+0.6
1,851,615	-		ABIE53_001664	0.24	-2.4
1,851,615	-		ABIE53_001664	0.24	-1.2
1,851,615	-		ABIE53_001664	0.24	-3.4
1,851,616	+		ABIE53_001664	0.24	-0.2
1,851,616	+		ABIE53_001664	0.24	-2.4
1,851,616	+		ABIE53_001664	0.24	-1.9
1,851,617	-		ABIE53_001664	0.24	-0.2
1,851,617	-		ABIE53_001664	0.24	-2.9
1,851,617	-		ABIE53_001664	0.24	+0.3
1,851,802	+		ABIE53_001664	0.33	-0.7
1,851,989	+		ABIE53_001664	0.42	-0.2
1,851,989	+		ABIE53_001664	0.42	-3.8
1,851,990	-		ABIE53_001664	0.42	+1.0
1,851,990	-		ABIE53_001664	0.42	+1.0
1,851,990	-		ABIE53_001664	0.42	-1.7
1,852,044	-		ABIE53_001664	0.45	-1.7
1,852,111	+		ABIE53_001664	0.48	-0.6
1,852,141	+		ABIE53_001664	0.50	-0.4
1,852,141	+		ABIE53_001664	0.50	-1.1
1,852,141	+		ABIE53_001664	0.50	-4.9
1,852,142	-		ABIE53_001664	0.50	-0.2
1,852,142	-		ABIE53_001664	0.50	-2.0
1,852,142	-		ABIE53_001664	0.50	-2.7
1,852,142	-		ABIE53_001664	0.50	-1.9
1,852,142	-		ABIE53_001664	0.50	+1.0
1,852,142	-		ABIE53_001664	0.50	-1.0
1,852,146	-		ABIE53_001664	0.50	-2.6
1,852,146	-		ABIE53_001664	0.50	-4.1
1,852,146	-		ABIE53_001664	0.50	-0.2
1,852,146	-		ABIE53_001664	0.50	-1.5
1,852,146	-		ABIE53_001664	0.50	-0.9
1,852,146	-		ABIE53_001664	0.50	-1.5
1,852,146	-		ABIE53_001664	0.50	-1.7
1,852,146	-		ABIE53_001664	0.50	-0.2
1,852,146	-		ABIE53_001664	0.50	-1.5
1,852,146	-		ABIE53_001664	0.50	-4.3
1,852,154	+		ABIE53_001664	0.50	+1.6
1,852,154	+		ABIE53_001664	0.50	-4.1
1,852,154	+		ABIE53_001664	0.50	+0.6
1,852,154	+		ABIE53_001664	0.50	-1.6
1,852,155	-		ABIE53_001664	0.50	-1.8
1,852,155	-		ABIE53_001664	0.50	-0.9
1,852,155	-		ABIE53_001664	0.50	+0.3
1,852,155	-		ABIE53_001664	0.50	-1.9
1,852,155	-		ABIE53_001664	0.50	+0.0
1,852,155	-		ABIE53_001664	0.50	-1.8
1,852,155	-		ABIE53_001664	0.50	+0.6
1,852,266	-		ABIE53_001664	0.56	-3.7
1,852,337	+		ABIE53_001664	0.59	-3.3
1,852,407	-		ABIE53_001664	0.63	-0.2
1,852,447	+		ABIE53_001664	0.65	+0.0
1,852,665	-		ABIE53_001664	0.75	-1.0
1,852,665	-		ABIE53_001664	0.75	-1.8
1,852,665	-		ABIE53_001664	0.75	-1.2
1,852,676	+		ABIE53_001664	0.76	-0.7
1,852,676	+		ABIE53_001664	0.76	-2.9
1,852,676	+		ABIE53_001664	0.76	-1.1
1,852,676	+		ABIE53_001664	0.76	-2.4
1,852,677	-		ABIE53_001664	0.76	+1.6
1,852,677	-		ABIE53_001664	0.76	+1.0
1,852,677	-		ABIE53_001664	0.76	+0.3
1,852,677	-		ABIE53_001664	0.76	-3.4
1,852,677	-		ABIE53_001664	0.76	-0.4
1,852,677	-		ABIE53_001664	0.76	-2.6
1,852,677	-		ABIE53_001664	0.76	-1.4
1,852,677	-		ABIE53_001664	0.76	-1.0
1,852,677	-		ABIE53_001664	0.76	-2.0
1,853,165	+				+1.6
1,853,165	+				-0.5
1,853,165	+				+0.4
1,853,165	+				+0.8
1,853,166	-				+0.0
1,853,166	-				-1.7
1,853,214	+				+0.5
1,853,215	-				+0.6
1,853,334	+		ABIE53_001665	0.17	-1.4
1,853,334	+		ABIE53_001665	0.17	+0.8
1,853,335	-		ABIE53_001665	0.17	-0.2
1,853,338	+		ABIE53_001665	0.17	-0.2
1,853,338	+		ABIE53_001665	0.17	+0.0
1,853,338	+		ABIE53_001665	0.17	+0.0
1,853,338	+		ABIE53_001665	0.17	-0.9
1,853,338	+		ABIE53_001665	0.17	-0.8
1,853,338	+		ABIE53_001665	0.17	-1.4
1,853,339	-		ABIE53_001665	0.18	-0.6
1,853,339	-		ABIE53_001665	0.18	-1.4
1,853,339	-		ABIE53_001665	0.18	-2.1
1,853,339	-		ABIE53_001665	0.18	-1.1
1,853,339	-		ABIE53_001665	0.18	-0.7
1,853,339	-		ABIE53_001665	0.18	-0.7
1,853,339	-		ABIE53_001665	0.18	+0.2
1,853,339	-		ABIE53_001665	0.18	+0.3
1,853,339	-		ABIE53_001665	0.18	-1.7
1,853,339	-		ABIE53_001665	0.18	-1.0
1,853,339	-		ABIE53_001665	0.18	-2.5
1,853,438	+		ABIE53_001665	0.35	+0.6
1,853,439	-		ABIE53_001665	0.35	+0.4
1,853,450	-		ABIE53_001665	0.37	-0.7
1,853,565	-		ABIE53_001665	0.58	-1.4
1,853,594	+		ABIE53_001665	0.63	-2.7
1,853,594	+		ABIE53_001665	0.63	+0.0
1,853,594	+		ABIE53_001665	0.63	-1.0
1,853,594	+		ABIE53_001665	0.63	-1.9
1,853,594	+		ABIE53_001665	0.63	-1.7
1,853,594	+		ABIE53_001665	0.63	-1.4
1,853,595	-		ABIE53_001665	0.63	-0.2
1,853,595	-		ABIE53_001665	0.63	+1.6
1,853,595	-		ABIE53_001665	0.63	-1.1
1,853,615	+		ABIE53_001665	0.66	-1.8
1,853,615	+		ABIE53_001665	0.66	-2.5
1,853,615	+		ABIE53_001665	0.66	+1.0
1,853,616	-		ABIE53_001665	0.67	-3.2
1,853,616	-		ABIE53_001665	0.67	-1.7
1,853,616	-		ABIE53_001665	0.67	-1.8
1,853,618	-		ABIE53_001665	0.67	-0.4
1,853,720	-		ABIE53_001665	0.85	-0.7
1,853,727	+		ABIE53_001665	0.86	-1.1
1,853,727	+		ABIE53_001665	0.86	+0.6
1,853,727	+		ABIE53_001665	0.86	-0.2
1,853,728	-		ABIE53_001665	0.87	+1.6
1,853,737	+		ABIE53_001665	0.88	-0.4
1,853,737	+		ABIE53_001665	0.88	-0.2
1,853,739	+		ABIE53_001665	0.88	-1.4
1,853,739	+		ABIE53_001665	0.88	-0.4
1,853,739	+		ABIE53_001665	0.88	-0.6
1,853,739	+		ABIE53_001665	0.88	-1.5
1,853,740	-		ABIE53_001665	0.89	-1.8
1,853,740	-		ABIE53_001665	0.89	+0.3
1,853,740	-		ABIE53_001665	0.89	-1.1
1,853,740	-		ABIE53_001665	0.89	+1.0
1,853,801	+				+0.4
1,853,801	+				+1.0
1,853,802	-				-0.9
1,853,838	+				+1.6
1,853,838	+				+0.4
1,853,847	+				+1.2
1,853,847	+				-0.5
1,853,847	+				-3.3
1,853,847	+				+0.3
1,853,848	-				-2.3
1,853,848	-				-2.1
1,853,849	+				-0.7
1,853,849	+				+0.0
1,853,850	-				-1.5
1,853,850	-				-0.7
1,853,850	-				-2.1
1,853,874	+				-1.1
1,853,874	+				+2.6
1,853,874	+				-1.6
1,853,874	+				-1.9
1,853,874	+				-1.2
1,853,874	+				+0.3
1,853,874	+				-1.9
1,853,874	+				-1.7
1,853,874	+				+1.6
1,853,874	+				+0.6
1,853,875	-				+0.2
1,853,875	-				+0.3
1,853,875	-				-1.5
1,853,875	-				+0.0
1,853,875	-				-2.1
1,853,875	-				-0.7
1,853,926	-				-1.3
1,853,955	+				+0.5
1,853,955	+				-0.6
1,853,955	+				-1.0
1,853,956	-				-3.0
1,854,000	+				-1.7
1,854,001	-				-0.7
1,854,001	-				+0.0
1,854,003	+				+1.0
1,854,003	+				-0.4
1,854,003	+				-0.6
1,854,004	-				+0.3
1,854,004	-				+1.6
1,854,004	-				-1.6
1,854,102	+		ABIE53_001666	0.15	-1.3
1,854,103	-		ABIE53_001666	0.15	-0.4
1,854,115	-		ABIE53_001666	0.15	-2.3
1,854,129	+		ABIE53_001666	0.16	+0.0
1,854,130	-		ABIE53_001666	0.16	-0.2