Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000500 and ABIE53_000501 are separated by 24 nucleotides ABIE53_000501 and ABIE53_000502 overlap by 4 nucleotides ABIE53_000502 and ABIE53_000503 are separated by 130 nucleotides
ABIE53_000500: ABIE53_000500 - putative DNA-binding transcriptional regulator YafY, at 538,267 to 539,286
_000500
ABIE53_000501: ABIE53_000501 - hypothetical protein, at 539,311 to 540,945
_000501
ABIE53_000502: ABIE53_000502 - hypothetical protein, at 540,942 to 541,637
_000502
ABIE53_000503: ABIE53_000503 - DNA invertase Pin-like site-specific DNA recombinase, at 541,768 to 542,340
_000503
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 538.327 kb on + strand at 538.327 kb on + strand at 538.328 kb on - strand at 538.328 kb on - strand at 538.365 kb on + strand at 538.365 kb on + strand at 538.365 kb on + strand at 538.366 kb on - strand at 538.366 kb on - strand at 538.397 kb on + strand, within ABIE53_000500 at 538.397 kb on + strand, within ABIE53_000500 at 538.397 kb on + strand, within ABIE53_000500 at 538.397 kb on + strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.399 kb on + strand, within ABIE53_000500 at 538.399 kb on + strand, within ABIE53_000500 at 538.399 kb on + strand, within ABIE53_000500 at 538.400 kb on - strand, within ABIE53_000500 at 538.400 kb on - strand, within ABIE53_000500 at 538.467 kb on - strand, within ABIE53_000500 at 538.467 kb on - strand, within ABIE53_000500 at 538.467 kb on - strand, within ABIE53_000500 at 538.503 kb on + strand, within ABIE53_000500 at 538.666 kb on + strand, within ABIE53_000500 at 538.666 kb on + strand, within ABIE53_000500 at 538.666 kb on + strand, within ABIE53_000500 at 538.721 kb on - strand, within ABIE53_000500 at 538.750 kb on - strand, within ABIE53_000500 at 538.750 kb on - strand, within ABIE53_000500 at 538.795 kb on + strand, within ABIE53_000500 at 538.796 kb on - strand, within ABIE53_000500 at 538.838 kb on + strand, within ABIE53_000500 at 538.838 kb on + strand, within ABIE53_000500 at 538.838 kb on + strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.877 kb on - strand, within ABIE53_000500 at 538.877 kb on - strand, within ABIE53_000500 at 538.877 kb on - strand, within ABIE53_000500 at 538.918 kb on + strand, within ABIE53_000500 at 538.918 kb on + strand, within ABIE53_000500 at 538.918 kb on + strand, within ABIE53_000500 at 538.919 kb on - strand, within ABIE53_000500 at 538.919 kb on - strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 539.203 kb on + strand at 539.204 kb on - strand at 539.204 kb on - strand at 539.204 kb on - strand at 539.213 kb on + strand at 539.213 kb on + strand at 539.214 kb on - strand at 539.214 kb on - strand at 539.284 kb on + strand at 539.284 kb on + strand at 539.321 kb on + strand at 539.321 kb on + strand at 539.321 kb on + strand at 539.322 kb on - strand at 539.322 kb on - strand at 539.352 kb on - strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.425 kb on + strand at 539.426 kb on - strand at 539.569 kb on - strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.668 kb on + strand, within ABIE53_000501 at 539.689 kb on + strand, within ABIE53_000501 at 539.701 kb on + strand, within ABIE53_000501 at 539.702 kb on - strand, within ABIE53_000501 at 539.702 kb on - strand, within ABIE53_000501 at 539.702 kb on - strand, within ABIE53_000501 at 539.713 kb on + strand, within ABIE53_000501 at 539.713 kb on + strand, within ABIE53_000501 at 539.713 kb on + strand, within ABIE53_000501 at 539.714 kb on - strand, within ABIE53_000501 at 540.064 kb on + strand, within ABIE53_000501 at 540.064 kb on + strand, within ABIE53_000501 at 540.065 kb on - strand, within ABIE53_000501 at 540.065 kb on - strand, within ABIE53_000501 at 540.065 kb on - strand, within ABIE53_000501 at 540.128 kb on + strand, within ABIE53_000501 at 540.128 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.379 kb on + strand, within ABIE53_000501 at 540.379 kb on + strand, within ABIE53_000501 at 540.465 kb on + strand, within ABIE53_000501 at 540.544 kb on + strand, within ABIE53_000501 at 540.544 kb on + strand, within ABIE53_000501 at 540.544 kb on + strand, within ABIE53_000501 at 540.545 kb on - strand, within ABIE53_000501 at 540.545 kb on - strand, within ABIE53_000501 at 540.711 kb on + strand, within ABIE53_000501 at 540.711 kb on + strand, within ABIE53_000501 at 540.711 kb on + strand, within ABIE53_000501 at 540.715 kb on + strand, within ABIE53_000501 at 540.715 kb on + strand, within ABIE53_000501 at 540.716 kb on - strand, within ABIE53_000501 at 540.716 kb on - strand, within ABIE53_000501 at 540.716 kb on - strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.772 kb on + strand, within ABIE53_000501 at 540.773 kb on - strand, within ABIE53_000501 at 540.943 kb on + strand at 540.943 kb on + strand at 540.943 kb on + strand at 540.944 kb on - strand at 540.944 kb on - strand at 541.031 kb on + strand, within ABIE53_000502 at 541.031 kb on + strand, within ABIE53_000502 at 541.032 kb on - strand, within ABIE53_000502 at 541.139 kb on + strand, within ABIE53_000502 at 541.195 kb on + strand, within ABIE53_000502 at 541.195 kb on + strand, within ABIE53_000502 at 541.196 kb on - strand, within ABIE53_000502 at 541.196 kb on - strand, within ABIE53_000502 at 541.196 kb on - strand, within ABIE53_000502 at 541.196 kb on - strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.466 kb on + strand, within ABIE53_000502 at 541.467 kb on - strand, within ABIE53_000502 at 541.599 kb on - strand at 541.599 kb on - strand at 541.599 kb on - strand at 541.599 kb on - strand at 541.601 kb on - strand at 541.664 kb on + strand at 541.664 kb on + strand at 541.664 kb on + strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.665 kb on - strand at 541.668 kb on + strand at 541.668 kb on + strand at 541.668 kb on + strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.669 kb on - strand at 541.674 kb on + strand at 541.675 kb on - strand at 541.675 kb on - strand at 541.794 kb on + strand at 541.823 kb on + strand at 541.823 kb on + strand at 541.824 kb on - strand at 541.824 kb on - strand at 541.824 kb on - strand at 541.917 kb on - strand, within ABIE53_000503 at 541.938 kb on + strand, within ABIE53_000503 at 541.938 kb on + strand, within ABIE53_000503 at 541.939 kb on - strand, within ABIE53_000503
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 538,327 + -2.0 538,327 + +3.2 538,328 - +1.2 538,328 - -0.8 538,365 + -1.9 538,365 + +0.4 538,365 + -0.3 538,366 - -1.7 538,366 - +0.5 538,397 + ABIE53_000500 0.13 +1.5 538,397 + ABIE53_000500 0.13 -1.9 538,397 + ABIE53_000500 0.13 -0.5 538,397 + ABIE53_000500 0.13 -0.7 538,398 - ABIE53_000500 0.13 +0.8 538,398 - ABIE53_000500 0.13 +0.1 538,398 - ABIE53_000500 0.13 +1.7 538,398 - ABIE53_000500 0.13 +0.2 538,398 - ABIE53_000500 0.13 -0.2 538,399 + ABIE53_000500 0.13 -0.9 538,399 + ABIE53_000500 0.13 +0.2 538,399 + ABIE53_000500 0.13 +1.2 538,400 - ABIE53_000500 0.13 +2.8 538,400 - ABIE53_000500 0.13 +0.7 538,467 - ABIE53_000500 0.20 -2.0 538,467 - ABIE53_000500 0.20 -1.1 538,467 - ABIE53_000500 0.20 +0.5 538,503 + ABIE53_000500 0.23 -0.3 538,666 + ABIE53_000500 0.39 -1.3 538,666 + ABIE53_000500 0.39 -1.1 538,666 + ABIE53_000500 0.39 +1.8 538,721 - ABIE53_000500 0.45 +1.2 538,750 - ABIE53_000500 0.47 -0.3 538,750 - ABIE53_000500 0.47 -1.1 538,795 + ABIE53_000500 0.52 +0.0 538,796 - ABIE53_000500 0.52 +1.5 538,838 + ABIE53_000500 0.56 -0.5 538,838 + ABIE53_000500 0.56 +0.4 538,838 + ABIE53_000500 0.56 -0.4 538,839 - ABIE53_000500 0.56 -1.2 538,839 - ABIE53_000500 0.56 +0.0 538,839 - ABIE53_000500 0.56 +1.5 538,839 - ABIE53_000500 0.56 -1.1 538,839 - ABIE53_000500 0.56 -0.6 538,876 + ABIE53_000500 0.60 +0.8 538,876 + ABIE53_000500 0.60 +0.2 538,876 + ABIE53_000500 0.60 +1.8 538,876 + ABIE53_000500 0.60 +1.0 538,877 - ABIE53_000500 0.60 +0.5 538,877 - ABIE53_000500 0.60 -2.6 538,877 - ABIE53_000500 0.60 +1.2 538,918 + ABIE53_000500 0.64 -1.1 538,918 + ABIE53_000500 0.64 -2.2 538,918 + ABIE53_000500 0.64 +0.4 538,919 - ABIE53_000500 0.64 +2.8 538,919 - ABIE53_000500 0.64 -1.0 538,996 + ABIE53_000500 0.71 -1.5 538,996 + ABIE53_000500 0.71 +0.8 538,996 + ABIE53_000500 0.71 -1.0 538,996 + ABIE53_000500 0.71 -1.3 538,996 + ABIE53_000500 0.71 -1.3 538,997 - ABIE53_000500 0.72 +2.0 538,997 - ABIE53_000500 0.72 -2.8 538,997 - ABIE53_000500 0.72 +1.2 538,997 - ABIE53_000500 0.72 +0.2 538,997 - ABIE53_000500 0.72 +1.8 538,997 - ABIE53_000500 0.72 -0.6 538,997 - ABIE53_000500 0.72 -1.4 539,203 + -0.8 539,204 - +1.4 539,204 - +0.8 539,204 - -0.2 539,213 + +1.6 539,213 + +0.2 539,214 - -3.2 539,214 - -1.8 539,284 + +1.8 539,284 + -0.5 539,321 + +0.2 539,321 + -1.0 539,321 + -0.6 539,322 - -0.3 539,322 - +0.0 539,352 - +0.3 539,416 + -2.2 539,416 + +0.9 539,416 + +0.7 539,416 + -1.5 539,416 + -0.2 539,416 + +0.2 539,416 + +0.6 539,416 + -1.9 539,416 + +0.3 539,416 + +0.1 539,417 - +0.5 539,417 - -0.8 539,417 - +1.0 539,417 - -0.5 539,417 - -0.6 539,417 - -0.5 539,417 - -0.8 539,417 - +0.5 539,425 + +1.6 539,426 - -1.6 539,569 - ABIE53_000501 0.16 +0.5 539,575 + ABIE53_000501 0.16 -0.4 539,575 + ABIE53_000501 0.16 -0.6 539,575 + ABIE53_000501 0.16 -0.6 539,575 + ABIE53_000501 0.16 +1.9 539,576 - ABIE53_000501 0.16 -0.6 539,576 - ABIE53_000501 0.16 +0.0 539,576 - ABIE53_000501 0.16 -1.0 539,576 - ABIE53_000501 0.16 +0.5 539,576 - ABIE53_000501 0.16 -0.2 539,576 - ABIE53_000501 0.16 -0.4 539,668 + ABIE53_000501 0.22 +1.2 539,689 + ABIE53_000501 0.23 -0.8 539,701 + ABIE53_000501 0.24 -3.5 539,702 - ABIE53_000501 0.24 +0.5 539,702 - ABIE53_000501 0.24 +0.5 539,702 - ABIE53_000501 0.24 +1.2 539,713 + ABIE53_000501 0.25 +1.8 539,713 + ABIE53_000501 0.25 +2.2 539,713 + ABIE53_000501 0.25 -1.8 539,714 - ABIE53_000501 0.25 -0.6 540,064 + ABIE53_000501 0.46 -1.1 540,064 + ABIE53_000501 0.46 +0.5 540,065 - ABIE53_000501 0.46 -0.3 540,065 - ABIE53_000501 0.46 -0.8 540,065 - ABIE53_000501 0.46 -2.2 540,128 + ABIE53_000501 0.50 -1.4 540,128 + ABIE53_000501 0.50 +2.8 540,136 + ABIE53_000501 0.50 -0.3 540,136 + ABIE53_000501 0.50 -1.4 540,136 + ABIE53_000501 0.50 +1.7 540,136 + ABIE53_000501 0.50 +0.8 540,136 + ABIE53_000501 0.50 -0.6 540,136 + ABIE53_000501 0.50 -0.9 540,136 + ABIE53_000501 0.50 -0.2 540,137 - ABIE53_000501 0.51 -0.9 540,137 - ABIE53_000501 0.51 -1.6 540,137 - ABIE53_000501 0.51 -1.3 540,137 - ABIE53_000501 0.51 +0.5 540,137 - ABIE53_000501 0.51 +0.8 540,379 + ABIE53_000501 0.65 -1.4 540,379 + ABIE53_000501 0.65 +2.1 540,465 + ABIE53_000501 0.71 +0.4 540,544 + ABIE53_000501 0.75 -0.7 540,544 + ABIE53_000501 0.75 -1.2 540,544 + ABIE53_000501 0.75 +0.8 540,545 - ABIE53_000501 0.75 +0.2 540,545 - ABIE53_000501 0.75 -0.1 540,711 + ABIE53_000501 0.86 -0.5 540,711 + ABIE53_000501 0.86 -0.5 540,711 + ABIE53_000501 0.86 +2.2 540,715 + ABIE53_000501 0.86 -0.6 540,715 + ABIE53_000501 0.86 -1.3 540,716 - ABIE53_000501 0.86 -0.5 540,716 - ABIE53_000501 0.86 -1.0 540,716 - ABIE53_000501 0.86 -0.4 540,772 + ABIE53_000501 0.89 +1.0 540,772 + ABIE53_000501 0.89 -0.1 540,772 + ABIE53_000501 0.89 +0.8 540,772 + ABIE53_000501 0.89 -1.3 540,772 + ABIE53_000501 0.89 -1.2 540,772 + ABIE53_000501 0.89 -3.0 540,772 + ABIE53_000501 0.89 -1.1 540,773 - ABIE53_000501 0.89 -0.6 540,943 + -0.8 540,943 + -0.5 540,943 + -1.7 540,944 - -0.9 540,944 - +0.2 541,031 + ABIE53_000502 0.13 +0.2 541,031 + ABIE53_000502 0.13 +0.2 541,032 - ABIE53_000502 0.13 +0.4 541,139 + ABIE53_000502 0.28 -1.9 541,195 + ABIE53_000502 0.36 +3.6 541,195 + ABIE53_000502 0.36 -0.2 541,196 - ABIE53_000502 0.36 +0.5 541,196 - ABIE53_000502 0.36 +0.2 541,196 - ABIE53_000502 0.36 -1.1 541,196 - ABIE53_000502 0.36 +0.0 541,466 + ABIE53_000502 0.75 -0.3 541,466 + ABIE53_000502 0.75 -0.4 541,466 + ABIE53_000502 0.75 +1.9 541,466 + ABIE53_000502 0.75 -0.2 541,466 + ABIE53_000502 0.75 +0.0 541,467 - ABIE53_000502 0.75 +0.7 541,599 - +1.0 541,599 - -1.0 541,599 - +0.2 541,599 - +0.9 541,601 - -0.2 541,664 + -0.8 541,664 + -2.6 541,664 + +2.3 541,665 - -1.4 541,665 - +0.5 541,665 - -1.8 541,665 - -0.2 541,665 - -0.5 541,665 - +0.2 541,668 + -1.0 541,668 + +0.2 541,668 + +0.2 541,669 - -1.6 541,669 - +2.8 541,669 - +1.6 541,669 - -1.4 541,669 - +2.8 541,669 - +0.5 541,674 + -1.0 541,675 - +0.5 541,675 - -0.0 541,794 + -1.4 541,823 + -0.8 541,823 + -0.8 541,824 - +1.8 541,824 - -0.6 541,824 - -1.0 541,917 - ABIE53_000503 0.26 +0.0 541,938 + ABIE53_000503 0.30 -0.6 541,938 + ABIE53_000503 0.30 -2.0 541,939 - ABIE53_000503 0.30 -0.5
Or see this region's nucleotide sequence