Experiment: Formate/Acetate-Sulfate (10/60-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0102 and fepC are separated by 32 nucleotides fepC and DVU0104 are separated by 8 nucleotides DVU0104 and glnQ are separated by 243 nucleotides
DVU0102: DVU0102 - cation ABC transporter, periplasmic binding protein (TIGR), at 135,121 to 136,113
DVU0102
DVU0103: fepC - cation ABC transporter, ATP-binding protein, putative (TIGR), at 136,146 to 137,087
fepC
DVU0104: DVU0104 - cation ABC transporter, permease protein, putative (TIGR), at 137,096 to 137,932
DVU0104
DVU0105: glnQ - glutamine ABC transporter, ATP-binding protein (TIGR), at 138,176 to 138,910
glnQ
Position (kb) 137
138 Strain fitness (log2 ratio) -1
0
1 at 136.107 kb on + strand at 136.145 kb on + strand at 136.305 kb on + strand, within fepC at 136.364 kb on + strand, within fepC at 136.466 kb on - strand, within fepC at 136.480 kb on + strand, within fepC at 136.488 kb on - strand, within fepC at 136.497 kb on - strand, within fepC at 136.558 kb on - strand, within fepC at 136.732 kb on + strand, within fepC at 136.733 kb on - strand, within fepC at 136.847 kb on + strand, within fepC at 136.847 kb on + strand, within fepC at 136.847 kb on + strand, within fepC at 136.881 kb on + strand, within fepC at 136.920 kb on + strand, within fepC at 136.953 kb on - strand, within fepC at 136.955 kb on + strand, within fepC at 136.960 kb on + strand, within fepC at 136.990 kb on - strand, within fepC at 136.990 kb on - strand, within fepC at 137.081 kb on + strand at 137.129 kb on + strand at 137.148 kb on - strand at 137.190 kb on - strand, within DVU0104 at 137.286 kb on + strand, within DVU0104 at 137.453 kb on - strand, within DVU0104 at 137.455 kb on + strand, within DVU0104 at 137.467 kb on + strand, within DVU0104 at 137.500 kb on + strand, within DVU0104 at 137.545 kb on + strand, within DVU0104 at 137.617 kb on + strand, within DVU0104 at 137.625 kb on - strand, within DVU0104 at 137.625 kb on - strand, within DVU0104 at 137.625 kb on - strand, within DVU0104 at 137.644 kb on + strand, within DVU0104 at 137.686 kb on + strand, within DVU0104 at 137.694 kb on - strand, within DVU0104 at 137.801 kb on - strand, within DVU0104 at 137.881 kb on + strand at 137.896 kb on + strand at 137.896 kb on + strand at 138.062 kb on + strand at 138.125 kb on - strand at 138.175 kb on - strand at 138.486 kb on + strand, within glnQ at 138.486 kb on + strand, within glnQ at 138.494 kb on - strand, within glnQ at 138.494 kb on - strand, within glnQ at 138.501 kb on + strand, within glnQ at 138.501 kb on + strand, within glnQ at 138.509 kb on - strand, within glnQ at 138.544 kb on + strand, within glnQ at 138.544 kb on + strand, within glnQ at 138.624 kb on + strand, within glnQ at 138.664 kb on + strand, within glnQ at 138.664 kb on - strand, within glnQ at 138.676 kb on + strand, within glnQ at 138.709 kb on + strand, within glnQ at 138.717 kb on - strand, within glnQ at 138.767 kb on + strand, within glnQ at 138.775 kb on - strand, within glnQ at 138.790 kb on + strand, within glnQ at 138.798 kb on - strand, within glnQ at 138.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (10/60-30 mM) remove 136,107 + -0.9 136,145 + -0.1 136,305 + fepC DVU0103 0.17 -0.6 136,364 + fepC DVU0103 0.23 -1.0 136,466 - fepC DVU0103 0.34 +0.2 136,480 + fepC DVU0103 0.35 +0.1 136,488 - fepC DVU0103 0.36 +0.4 136,497 - fepC DVU0103 0.37 -0.2 136,558 - fepC DVU0103 0.44 +0.1 136,732 + fepC DVU0103 0.62 -0.2 136,733 - fepC DVU0103 0.62 +1.0 136,847 + fepC DVU0103 0.74 +0.2 136,847 + fepC DVU0103 0.74 -0.6 136,847 + fepC DVU0103 0.74 -0.5 136,881 + fepC DVU0103 0.78 +0.7 136,920 + fepC DVU0103 0.82 -0.5 136,953 - fepC DVU0103 0.86 -0.6 136,955 + fepC DVU0103 0.86 -0.7 136,960 + fepC DVU0103 0.86 +0.1 136,990 - fepC DVU0103 0.90 +0.2 136,990 - fepC DVU0103 0.90 -0.4 137,081 + +0.6 137,129 + -0.1 137,148 - -0.2 137,190 - DVU0104 0.11 +0.0 137,286 + DVU0104 0.23 -0.4 137,453 - DVU0104 0.43 +1.1 137,455 + DVU0104 0.43 -0.0 137,467 + DVU0104 0.44 -0.8 137,500 + DVU0104 0.48 +0.0 137,545 + DVU0104 0.54 +0.5 137,617 + DVU0104 0.62 -1.0 137,625 - DVU0104 0.63 +0.3 137,625 - DVU0104 0.63 +0.2 137,625 - DVU0104 0.63 +0.4 137,644 + DVU0104 0.65 +0.2 137,686 + DVU0104 0.70 +0.3 137,694 - DVU0104 0.71 -0.4 137,801 - DVU0104 0.84 -0.1 137,881 + -0.4 137,896 + +0.8 137,896 + -0.0 138,062 + +0.6 138,125 - -1.0 138,175 - -0.3 138,486 + glnQ DVU0105 0.42 +0.0 138,486 + glnQ DVU0105 0.42 +0.7 138,494 - glnQ DVU0105 0.43 +0.2 138,494 - glnQ DVU0105 0.43 -0.9 138,501 + glnQ DVU0105 0.44 -0.2 138,501 + glnQ DVU0105 0.44 -1.0 138,509 - glnQ DVU0105 0.45 -0.2 138,544 + glnQ DVU0105 0.50 -0.0 138,544 + glnQ DVU0105 0.50 -0.2 138,624 + glnQ DVU0105 0.61 -0.2 138,664 + glnQ DVU0105 0.66 -0.1 138,664 - glnQ DVU0105 0.66 +0.6 138,676 + glnQ DVU0105 0.68 -0.1 138,709 + glnQ DVU0105 0.73 +0.2 138,717 - glnQ DVU0105 0.74 -0.2 138,767 + glnQ DVU0105 0.80 -0.1 138,775 - glnQ DVU0105 0.81 +0.0 138,790 + glnQ DVU0105 0.84 +0.2 138,798 - glnQ DVU0105 0.85 -0.1 138,875 - +0.0
Or see this region's nucleotide sequence