Experiment: Citric Acid 16.67 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.712.1 and Xcc-8004.713.1 overlap by 4 nucleotides Xcc-8004.713.1 and Xcc-8004.714.1 are separated by 3 nucleotides Xcc-8004.714.1 and Xcc-8004.715.1 are separated by 61 nucleotides Xcc-8004.715.1 and Xcc-8004.716.1 are separated by 12 nucleotides
Xcc-8004.712.1: Xcc-8004.712.1 - Gluconolactonase (EC 3.1.1.17), at 663,334 to 664,254
Xcc-8004.712.1
Xcc-8004.713.1: Xcc-8004.713.1 - FIG01210186: hypothetical protein, at 664,251 to 664,769
Xcc-8004.713.1
Xcc-8004.714.1: Xcc-8004.714.1 - hypothetical protein, at 664,773 to 665,183
Xcc-8004.714.1
Xcc-8004.715.1: Xcc-8004.715.1 - RNA polymerase sigma factor, at 665,245 to 665,754
Xcc-8004.715.1
Xcc-8004.716.1: Xcc-8004.716.1 - Fe2+-dicitrate sensor, membrane component, at 665,767 to 666,792
Xcc-8004.716.1
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.018 kb on + strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.019 kb on - strand, within Xcc-8004.712.1 at 664.130 kb on + strand, within Xcc-8004.712.1 at 664.131 kb on - strand, within Xcc-8004.712.1 at 664.686 kb on - strand, within Xcc-8004.713.1 at 664.834 kb on + strand, within Xcc-8004.714.1 at 664.834 kb on + strand, within Xcc-8004.714.1 at 664.834 kb on + strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 665.041 kb on + strand, within Xcc-8004.714.1 at 665.041 kb on + strand, within Xcc-8004.714.1 at 665.041 kb on + strand, within Xcc-8004.714.1 at 665.176 kb on + strand at 665.290 kb on + strand at 665.290 kb on + strand at 665.290 kb on + strand at 665.290 kb on + strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.312 kb on + strand, within Xcc-8004.715.1 at 665.497 kb on + strand, within Xcc-8004.715.1 at 665.498 kb on - strand, within Xcc-8004.715.1 at 665.498 kb on - strand, within Xcc-8004.715.1 at 665.498 kb on - strand, within Xcc-8004.715.1 at 665.656 kb on + strand, within Xcc-8004.715.1 at 665.656 kb on + strand, within Xcc-8004.715.1 at 665.707 kb on + strand at 665.707 kb on + strand at 665.707 kb on + strand at 665.707 kb on + strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.897 kb on + strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 666.154 kb on + strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 16.67 mM (C) remove 664,018 + Xcc-8004.712.1 0.74 -0.5 664,018 + Xcc-8004.712.1 0.74 +2.7 664,018 + Xcc-8004.712.1 0.74 -0.3 664,018 + Xcc-8004.712.1 0.74 +0.7 664,018 + Xcc-8004.712.1 0.74 -0.8 664,018 + Xcc-8004.712.1 0.74 +1.1 664,018 + Xcc-8004.712.1 0.74 -1.5 664,018 + Xcc-8004.712.1 0.74 +0.7 664,019 - Xcc-8004.712.1 0.74 -0.3 664,019 - Xcc-8004.712.1 0.74 -0.1 664,019 - Xcc-8004.712.1 0.74 -1.1 664,019 - Xcc-8004.712.1 0.74 -0.8 664,019 - Xcc-8004.712.1 0.74 -0.0 664,019 - Xcc-8004.712.1 0.74 -0.3 664,019 - Xcc-8004.712.1 0.74 -0.3 664,019 - Xcc-8004.712.1 0.74 -0.9 664,019 - Xcc-8004.712.1 0.74 +0.7 664,019 - Xcc-8004.712.1 0.74 -0.5 664,019 - Xcc-8004.712.1 0.74 -1.6 664,019 - Xcc-8004.712.1 0.74 +0.6 664,130 + Xcc-8004.712.1 0.86 -0.8 664,131 - Xcc-8004.712.1 0.87 +0.4 664,686 - Xcc-8004.713.1 0.84 +1.3 664,834 + Xcc-8004.714.1 0.15 +0.4 664,834 + Xcc-8004.714.1 0.15 +1.3 664,834 + Xcc-8004.714.1 0.15 +3.2 664,835 - Xcc-8004.714.1 0.15 +1.4 664,835 - Xcc-8004.714.1 0.15 -0.1 664,835 - Xcc-8004.714.1 0.15 -0.2 664,835 - Xcc-8004.714.1 0.15 +0.1 664,835 - Xcc-8004.714.1 0.15 +0.4 665,041 + Xcc-8004.714.1 0.65 -1.0 665,041 + Xcc-8004.714.1 0.65 -1.1 665,041 + Xcc-8004.714.1 0.65 +1.1 665,176 + -1.5 665,290 + -0.2 665,290 + -1.7 665,290 + +0.2 665,290 + -0.5 665,291 - +0.6 665,291 - -2.5 665,291 - -0.6 665,291 - -1.7 665,291 - -0.7 665,291 - -1.0 665,291 - -1.1 665,312 + Xcc-8004.715.1 0.13 -0.4 665,497 + Xcc-8004.715.1 0.49 -0.5 665,498 - Xcc-8004.715.1 0.50 -2.5 665,498 - Xcc-8004.715.1 0.50 -1.1 665,498 - Xcc-8004.715.1 0.50 -1.0 665,656 + Xcc-8004.715.1 0.81 -0.2 665,656 + Xcc-8004.715.1 0.81 +2.0 665,707 + -0.5 665,707 + +1.2 665,707 + -0.5 665,707 + -1.4 665,708 - +0.2 665,708 - +0.4 665,708 - +1.5 665,708 - -1.7 665,708 - -1.6 665,897 + Xcc-8004.716.1 0.13 -0.3 665,898 - Xcc-8004.716.1 0.13 -1.3 665,898 - Xcc-8004.716.1 0.13 -0.6 665,898 - Xcc-8004.716.1 0.13 +0.6 665,898 - Xcc-8004.716.1 0.13 +1.0 665,898 - Xcc-8004.716.1 0.13 -0.7 666,154 + Xcc-8004.716.1 0.38 +0.4 666,155 - Xcc-8004.716.1 0.38 -0.9 666,155 - Xcc-8004.716.1 0.38 -1.1 666,155 - Xcc-8004.716.1 0.38 -0.3 666,155 - Xcc-8004.716.1 0.38 +2.5
Or see this region's nucleotide sequence