Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3140.1

Experiment: Citric Acid 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3138.1 and Xcc-8004.3139.1 are separated by 5 nucleotidesXcc-8004.3139.1 and Xcc-8004.3140.1 overlap by 4 nucleotidesXcc-8004.3140.1 and Xcc-8004.3141.1 are separated by 3 nucleotides Xcc-8004.3138.1: Xcc-8004.3138.1 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 3,059,389 to 3,059,880 Xcc-8004.3138.1 Xcc-8004.3139.1: Xcc-8004.3139.1 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,059,886 to 3,060,683 Xcc-8004.3139.1 Xcc-8004.3140.1: Xcc-8004.3140.1 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,060,680 to 3,061,045 Xcc-8004.3140.1 Xcc-8004.3141.1: Xcc-8004.3141.1 - Enolase (EC 4.2.1.11), at 3,061,049 to 3,062,341 Xcc-8004.3141.1 Position (kb) 3060 3061 3062Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.888 kb on - strandat 3059.955 kb on - strandat 3060.693 kb on - strandat 3060.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 16.67 mM (C)
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3,059,888 - +1.4
3,059,888 - +0.9
3,059,888 - -1.9
3,059,888 - -0.1
3,059,888 - +0.5
3,059,888 - -0.4
3,059,888 - +0.8
3,059,888 - -2.1
3,059,888 - +0.0
3,059,888 - -1.1
3,059,888 - +3.9
3,059,888 - -2.1
3,059,955 - +0.2
3,060,693 - -1.9
3,060,693 - +0.5

Or see this region's nucleotide sequence