Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1945.1

Experiment: Citric Acid 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1944.1 and Xcc-8004.1945.1 are separated by 524 nucleotidesXcc-8004.1945.1 and Xcc-8004.1947.1 are separated by 348 nucleotidesXcc-8004.1947.1 and Xcc-8004.1948.1 are separated by 121 nucleotides Xcc-8004.1944.1: Xcc-8004.1944.1 - FIG01211388: hypothetical protein, at 1,874,144 to 1,874,980 Xcc-8004.1944.1 Xcc-8004.1945.1: Xcc-8004.1945.1 - GDP-mannose pyrophosphatase YffH, at 1,875,505 to 1,876,134 Xcc-8004.1945.1 Xcc-8004.1947.1: Xcc-8004.1947.1 - hypothetical protein, at 1,876,483 to 1,877,004 Xcc-8004.1947.1 Xcc-8004.1948.1: Xcc-8004.1948.1 - ATPase component BioM of energizing module of biotin ECF transporter, at 1,877,126 to 1,878,631 Xcc-8004.1948.1 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1874.712 kb on + strand, within Xcc-8004.1944.1at 1874.713 kb on - strand, within Xcc-8004.1944.1at 1874.713 kb on - strand, within Xcc-8004.1944.1at 1874.772 kb on + strand, within Xcc-8004.1944.1at 1874.772 kb on + strand, within Xcc-8004.1944.1at 1874.773 kb on - strand, within Xcc-8004.1944.1at 1874.773 kb on - strand, within Xcc-8004.1944.1at 1874.773 kb on - strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.776 kb on + strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.777 kb on - strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.778 kb on + strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.779 kb on - strand, within Xcc-8004.1944.1at 1874.871 kb on + strand, within Xcc-8004.1944.1at 1874.871 kb on + strand, within Xcc-8004.1944.1at 1874.871 kb on + strand, within Xcc-8004.1944.1at 1874.872 kb on - strand, within Xcc-8004.1944.1at 1874.873 kb on + strand, within Xcc-8004.1944.1at 1874.873 kb on + strand, within Xcc-8004.1944.1at 1874.874 kb on - strand, within Xcc-8004.1944.1at 1874.874 kb on - strand, within Xcc-8004.1944.1at 1874.896 kb on - strand, within Xcc-8004.1944.1at 1874.896 kb on - strand, within Xcc-8004.1944.1at 1875.119 kb on + strandat 1875.154 kb on + strandat 1875.207 kb on - strandat 1875.324 kb on - strandat 1875.360 kb on + strandat 1875.360 kb on + strandat 1875.360 kb on + strandat 1875.360 kb on + strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.361 kb on - strandat 1875.604 kb on + strand, within Xcc-8004.1945.1at 1875.604 kb on + strand, within Xcc-8004.1945.1at 1875.605 kb on - strand, within Xcc-8004.1945.1at 1875.605 kb on - strand, within Xcc-8004.1945.1at 1875.605 kb on - strand, within Xcc-8004.1945.1at 1875.605 kb on - strand, within Xcc-8004.1945.1at 1875.611 kb on + strand, within Xcc-8004.1945.1at 1875.611 kb on + strand, within Xcc-8004.1945.1at 1875.611 kb on + strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.612 kb on - strand, within Xcc-8004.1945.1at 1875.615 kb on + strand, within Xcc-8004.1945.1at 1875.615 kb on + strand, within Xcc-8004.1945.1at 1875.615 kb on + strand, within Xcc-8004.1945.1at 1875.615 kb on + strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.616 kb on - strand, within Xcc-8004.1945.1at 1875.676 kb on + strand, within Xcc-8004.1945.1at 1875.677 kb on - strand, within Xcc-8004.1945.1at 1875.709 kb on + strand, within Xcc-8004.1945.1at 1875.710 kb on - strand, within Xcc-8004.1945.1at 1875.710 kb on - strand, within Xcc-8004.1945.1at 1875.840 kb on + strand, within Xcc-8004.1945.1at 1875.840 kb on + strand, within Xcc-8004.1945.1at 1875.891 kb on + strand, within Xcc-8004.1945.1at 1875.891 kb on + strand, within Xcc-8004.1945.1at 1875.891 kb on + strand, within Xcc-8004.1945.1at 1875.891 kb on + strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.892 kb on - strand, within Xcc-8004.1945.1at 1875.940 kb on + strand, within Xcc-8004.1945.1at 1875.940 kb on + strand, within Xcc-8004.1945.1at 1875.958 kb on + strand, within Xcc-8004.1945.1at 1875.958 kb on + strand, within Xcc-8004.1945.1at 1875.958 kb on + strand, within Xcc-8004.1945.1at 1875.958 kb on + strand, within Xcc-8004.1945.1at 1875.959 kb on - strand, within Xcc-8004.1945.1at 1876.105 kb on + strandat 1876.106 kb on - strandat 1876.132 kb on + strandat 1876.132 kb on + strandat 1876.132 kb on + strandat 1876.133 kb on - strandat 1876.133 kb on - strandat 1876.162 kb on - strandat 1876.162 kb on - strandat 1876.172 kb on - strandat 1876.172 kb on - strandat 1876.363 kb on + strandat 1876.364 kb on - strandat 1876.381 kb on + strandat 1876.381 kb on + strandat 1876.382 kb on - strandat 1876.424 kb on + strandat 1876.425 kb on - strandat 1876.441 kb on + strandat 1876.441 kb on + strandat 1876.468 kb on - strandat 1876.565 kb on + strand, within Xcc-8004.1947.1at 1876.565 kb on + strand, within Xcc-8004.1947.1at 1876.566 kb on - strand, within Xcc-8004.1947.1at 1876.566 kb on - strand, within Xcc-8004.1947.1at 1876.566 kb on - strand, within Xcc-8004.1947.1at 1876.591 kb on - strand, within Xcc-8004.1947.1at 1876.767 kb on + strand, within Xcc-8004.1947.1at 1876.768 kb on - strand, within Xcc-8004.1947.1at 1876.768 kb on - strand, within Xcc-8004.1947.1at 1876.768 kb on - strand, within Xcc-8004.1947.1at 1876.770 kb on - strand, within Xcc-8004.1947.1at 1876.779 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.865 kb on + strand, within Xcc-8004.1947.1at 1876.866 kb on - strand, within Xcc-8004.1947.1at 1876.866 kb on - strand, within Xcc-8004.1947.1at 1876.984 kb on - strandat 1876.984 kb on - strandat 1877.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 16.67 mM (C)
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1,874,712 + Xcc-8004.1944.1 0.68 +1.0
1,874,713 - Xcc-8004.1944.1 0.68 -0.4
1,874,713 - Xcc-8004.1944.1 0.68 +0.8
1,874,772 + Xcc-8004.1944.1 0.75 -1.2
1,874,772 + Xcc-8004.1944.1 0.75 -1.0
1,874,773 - Xcc-8004.1944.1 0.75 +0.4
1,874,773 - Xcc-8004.1944.1 0.75 +1.8
1,874,773 - Xcc-8004.1944.1 0.75 -2.0
1,874,776 + Xcc-8004.1944.1 0.76 +0.7
1,874,776 + Xcc-8004.1944.1 0.76 -0.6
1,874,776 + Xcc-8004.1944.1 0.76 +1.8
1,874,776 + Xcc-8004.1944.1 0.76 -1.0
1,874,777 - Xcc-8004.1944.1 0.76 +0.1
1,874,777 - Xcc-8004.1944.1 0.76 -0.2
1,874,777 - Xcc-8004.1944.1 0.76 -0.9
1,874,777 - Xcc-8004.1944.1 0.76 -1.0
1,874,778 + Xcc-8004.1944.1 0.76 -2.6
1,874,778 + Xcc-8004.1944.1 0.76 -0.4
1,874,778 + Xcc-8004.1944.1 0.76 -0.0
1,874,778 + Xcc-8004.1944.1 0.76 +0.4
1,874,778 + Xcc-8004.1944.1 0.76 -0.6
1,874,778 + Xcc-8004.1944.1 0.76 -1.2
1,874,778 + Xcc-8004.1944.1 0.76 -0.2
1,874,778 + Xcc-8004.1944.1 0.76 -0.4
1,874,778 + Xcc-8004.1944.1 0.76 -0.7
1,874,778 + Xcc-8004.1944.1 0.76 -0.8
1,874,779 - Xcc-8004.1944.1 0.76 +0.6
1,874,779 - Xcc-8004.1944.1 0.76 -0.0
1,874,779 - Xcc-8004.1944.1 0.76 +0.0
1,874,779 - Xcc-8004.1944.1 0.76 -0.0
1,874,779 - Xcc-8004.1944.1 0.76 -1.2
1,874,779 - Xcc-8004.1944.1 0.76 -0.8
1,874,779 - Xcc-8004.1944.1 0.76 -0.4
1,874,779 - Xcc-8004.1944.1 0.76 -0.1
1,874,779 - Xcc-8004.1944.1 0.76 -0.0
1,874,871 + Xcc-8004.1944.1 0.87 -0.7
1,874,871 + Xcc-8004.1944.1 0.87 +0.4
1,874,871 + Xcc-8004.1944.1 0.87 -1.0
1,874,872 - Xcc-8004.1944.1 0.87 +1.6
1,874,873 + Xcc-8004.1944.1 0.87 +1.0
1,874,873 + Xcc-8004.1944.1 0.87 +1.0
1,874,874 - Xcc-8004.1944.1 0.87 -0.6
1,874,874 - Xcc-8004.1944.1 0.87 -0.4
1,874,896 - Xcc-8004.1944.1 0.90 -2.0
1,874,896 - Xcc-8004.1944.1 0.90 +0.3
1,875,119 + +0.1
1,875,154 + -0.9
1,875,207 - -0.2
1,875,324 - +1.0
1,875,360 + -0.0
1,875,360 + +0.0
1,875,360 + -0.3
1,875,360 + -0.3
1,875,361 - -0.4
1,875,361 - +0.7
1,875,361 - -0.3
1,875,361 - +0.3
1,875,361 - -0.0
1,875,361 - -1.9
1,875,361 - -1.5
1,875,361 - +0.4
1,875,604 + Xcc-8004.1945.1 0.16 +0.1
1,875,604 + Xcc-8004.1945.1 0.16 -0.1
1,875,605 - Xcc-8004.1945.1 0.16 -0.1
1,875,605 - Xcc-8004.1945.1 0.16 -1.2
1,875,605 - Xcc-8004.1945.1 0.16 -1.6
1,875,605 - Xcc-8004.1945.1 0.16 +0.6
1,875,611 + Xcc-8004.1945.1 0.17 -0.0
1,875,611 + Xcc-8004.1945.1 0.17 -0.9
1,875,611 + Xcc-8004.1945.1 0.17 -0.3
1,875,612 - Xcc-8004.1945.1 0.17 +2.1
1,875,612 - Xcc-8004.1945.1 0.17 +0.4
1,875,612 - Xcc-8004.1945.1 0.17 -1.0
1,875,612 - Xcc-8004.1945.1 0.17 +1.0
1,875,612 - Xcc-8004.1945.1 0.17 +0.4
1,875,612 - Xcc-8004.1945.1 0.17 +1.1
1,875,612 - Xcc-8004.1945.1 0.17 +0.9
1,875,615 + Xcc-8004.1945.1 0.17 +0.8
1,875,615 + Xcc-8004.1945.1 0.17 -0.0
1,875,615 + Xcc-8004.1945.1 0.17 +1.4
1,875,615 + Xcc-8004.1945.1 0.17 +1.1
1,875,616 - Xcc-8004.1945.1 0.18 +0.0
1,875,616 - Xcc-8004.1945.1 0.18 -0.6
1,875,616 - Xcc-8004.1945.1 0.18 -0.6
1,875,616 - Xcc-8004.1945.1 0.18 +0.5
1,875,616 - Xcc-8004.1945.1 0.18 +0.6
1,875,616 - Xcc-8004.1945.1 0.18 -0.2
1,875,616 - Xcc-8004.1945.1 0.18 +0.4
1,875,676 + Xcc-8004.1945.1 0.27 -0.7
1,875,677 - Xcc-8004.1945.1 0.27 +0.3
1,875,709 + Xcc-8004.1945.1 0.32 +0.6
1,875,710 - Xcc-8004.1945.1 0.33 +2.4
1,875,710 - Xcc-8004.1945.1 0.33 -0.0
1,875,840 + Xcc-8004.1945.1 0.53 +0.4
1,875,840 + Xcc-8004.1945.1 0.53 +0.8
1,875,891 + Xcc-8004.1945.1 0.61 +0.0
1,875,891 + Xcc-8004.1945.1 0.61 +0.3
1,875,891 + Xcc-8004.1945.1 0.61 +0.1
1,875,891 + Xcc-8004.1945.1 0.61 +0.4
1,875,892 - Xcc-8004.1945.1 0.61 +0.5
1,875,892 - Xcc-8004.1945.1 0.61 +0.7
1,875,892 - Xcc-8004.1945.1 0.61 -0.1
1,875,892 - Xcc-8004.1945.1 0.61 -0.0
1,875,892 - Xcc-8004.1945.1 0.61 +1.7
1,875,892 - Xcc-8004.1945.1 0.61 +0.5
1,875,892 - Xcc-8004.1945.1 0.61 +0.7
1,875,940 + Xcc-8004.1945.1 0.69 +3.0
1,875,940 + Xcc-8004.1945.1 0.69 +0.3
1,875,958 + Xcc-8004.1945.1 0.72 -0.2
1,875,958 + Xcc-8004.1945.1 0.72 +1.0
1,875,958 + Xcc-8004.1945.1 0.72 +2.7
1,875,958 + Xcc-8004.1945.1 0.72 +0.1
1,875,959 - Xcc-8004.1945.1 0.72 +0.4
1,876,105 + +0.5
1,876,106 - -0.4
1,876,132 + -0.1
1,876,132 + +0.4
1,876,132 + +0.1
1,876,133 - -1.0
1,876,133 - +0.5
1,876,162 - +0.0
1,876,162 - +0.9
1,876,172 - +0.3
1,876,172 - +0.5
1,876,363 + +0.8
1,876,364 - -1.3
1,876,381 + +0.2
1,876,381 + +0.8
1,876,382 - -1.5
1,876,424 + -0.1
1,876,425 - +0.4
1,876,441 + -0.4
1,876,441 + -0.6
1,876,468 - -1.4
1,876,565 + Xcc-8004.1947.1 0.16 -0.5
1,876,565 + Xcc-8004.1947.1 0.16 +0.4
1,876,566 - Xcc-8004.1947.1 0.16 +1.3
1,876,566 - Xcc-8004.1947.1 0.16 -0.6
1,876,566 - Xcc-8004.1947.1 0.16 -0.9
1,876,591 - Xcc-8004.1947.1 0.21 -1.4
1,876,767 + Xcc-8004.1947.1 0.54 +1.7
1,876,768 - Xcc-8004.1947.1 0.55 -0.0
1,876,768 - Xcc-8004.1947.1 0.55 +0.1
1,876,768 - Xcc-8004.1947.1 0.55 +0.5
1,876,770 - Xcc-8004.1947.1 0.55 +1.1
1,876,779 + Xcc-8004.1947.1 0.57 +1.0
1,876,865 + Xcc-8004.1947.1 0.73 +0.6
1,876,865 + Xcc-8004.1947.1 0.73 +1.7
1,876,865 + Xcc-8004.1947.1 0.73 -0.6
1,876,865 + Xcc-8004.1947.1 0.73 +1.7
1,876,865 + Xcc-8004.1947.1 0.73 +0.7
1,876,865 + Xcc-8004.1947.1 0.73 -1.5
1,876,865 + Xcc-8004.1947.1 0.73 -0.3
1,876,865 + Xcc-8004.1947.1 0.73 +0.7
1,876,866 - Xcc-8004.1947.1 0.73 +0.8
1,876,866 - Xcc-8004.1947.1 0.73 +0.0
1,876,984 - -0.2
1,876,984 - +1.2
1,877,069 - +1.0

Or see this region's nucleotide sequence