Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1607.1

Experiment: Citric Acid 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1605.1 and Xcc-8004.1606.1 overlap by 4 nucleotidesXcc-8004.1606.1 and Xcc-8004.1607.1 are separated by 96 nucleotidesXcc-8004.1607.1 and Xcc-8004.1608.1 are separated by 63 nucleotides Xcc-8004.1605.1: Xcc-8004.1605.1 - Cytochrome B561, at 1,538,784 to 1,539,347 Xcc-8004.1605.1 Xcc-8004.1606.1: Xcc-8004.1606.1 - FIG01211483: hypothetical protein, at 1,539,344 to 1,540,021 Xcc-8004.1606.1 Xcc-8004.1607.1: Xcc-8004.1607.1 - Histidine kinase/response regulator hybrid protein, at 1,540,118 to 1,543,678 Xcc-8004.1607.1 Xcc-8004.1608.1: Xcc-8004.1608.1 - Histidine kinase/response regulator hybrid protein, at 1,543,742 to 1,547,302 Xcc-8004.1608.1 Position (kb) 1540 1541 1542 1543 1544Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1539.139 kb on + strand, within Xcc-8004.1605.1at 1539.139 kb on + strand, within Xcc-8004.1605.1at 1539.139 kb on + strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.208 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.221 kb on - strand, within Xcc-8004.1605.1at 1539.221 kb on - strand, within Xcc-8004.1605.1at 1539.734 kb on + strand, within Xcc-8004.1606.1at 1539.734 kb on + strand, within Xcc-8004.1606.1at 1539.735 kb on - strand, within Xcc-8004.1606.1at 1539.735 kb on - strand, within Xcc-8004.1606.1at 1539.735 kb on - strand, within Xcc-8004.1606.1at 1539.942 kb on + strand, within Xcc-8004.1606.1at 1539.942 kb on + strand, within Xcc-8004.1606.1at 1539.942 kb on + strand, within Xcc-8004.1606.1at 1539.943 kb on - strand, within Xcc-8004.1606.1at 1540.032 kb on + strandat 1540.032 kb on + strandat 1540.268 kb on + strandat 1540.283 kb on - strandat 1540.385 kb on + strandat 1540.385 kb on + strandat 1540.385 kb on + strandat 1540.385 kb on + strandat 1540.386 kb on - strandat 1540.386 kb on - strandat 1540.472 kb on + strandat 1540.472 kb on + strandat 1540.472 kb on + strandat 1540.649 kb on + strand, within Xcc-8004.1607.1at 1540.737 kb on + strand, within Xcc-8004.1607.1at 1540.737 kb on + strand, within Xcc-8004.1607.1at 1540.737 kb on + strand, within Xcc-8004.1607.1at 1540.738 kb on - strand, within Xcc-8004.1607.1at 1540.823 kb on + strand, within Xcc-8004.1607.1at 1540.823 kb on + strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.929 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.955 kb on - strand, within Xcc-8004.1607.1at 1540.955 kb on - strand, within Xcc-8004.1607.1at 1540.955 kb on - strand, within Xcc-8004.1607.1at 1541.026 kb on + strand, within Xcc-8004.1607.1at 1541.026 kb on + strand, within Xcc-8004.1607.1at 1541.027 kb on - strand, within Xcc-8004.1607.1at 1541.087 kb on + strand, within Xcc-8004.1607.1at 1541.088 kb on - strand, within Xcc-8004.1607.1at 1541.088 kb on - strand, within Xcc-8004.1607.1at 1541.110 kb on + strand, within Xcc-8004.1607.1at 1541.110 kb on + strand, within Xcc-8004.1607.1at 1541.463 kb on - strand, within Xcc-8004.1607.1at 1541.463 kb on - strand, within Xcc-8004.1607.1at 1541.463 kb on - strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.615 kb on + strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1541.616 kb on - strand, within Xcc-8004.1607.1at 1542.014 kb on + strand, within Xcc-8004.1607.1at 1542.015 kb on - strand, within Xcc-8004.1607.1at 1542.180 kb on + strand, within Xcc-8004.1607.1at 1542.180 kb on + strand, within Xcc-8004.1607.1at 1542.181 kb on - strand, within Xcc-8004.1607.1at 1542.302 kb on + strand, within Xcc-8004.1607.1at 1542.302 kb on + strand, within Xcc-8004.1607.1at 1542.302 kb on + strand, within Xcc-8004.1607.1at 1542.303 kb on - strand, within Xcc-8004.1607.1at 1542.303 kb on - strand, within Xcc-8004.1607.1at 1542.475 kb on + strand, within Xcc-8004.1607.1at 1542.475 kb on + strand, within Xcc-8004.1607.1at 1542.475 kb on + strand, within Xcc-8004.1607.1at 1542.476 kb on - strand, within Xcc-8004.1607.1at 1542.476 kb on - strand, within Xcc-8004.1607.1at 1542.476 kb on - strand, within Xcc-8004.1607.1at 1542.476 kb on - strand, within Xcc-8004.1607.1at 1542.476 kb on - strand, within Xcc-8004.1607.1at 1542.650 kb on + strand, within Xcc-8004.1607.1at 1542.651 kb on - strand, within Xcc-8004.1607.1at 1542.651 kb on - strand, within Xcc-8004.1607.1at 1543.169 kb on - strand, within Xcc-8004.1607.1at 1543.702 kb on - strandat 1543.922 kb on + strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.959 kb on - strandat 1544.160 kb on + strand, within Xcc-8004.1608.1at 1544.160 kb on + strand, within Xcc-8004.1608.1at 1544.160 kb on + strand, within Xcc-8004.1608.1at 1544.161 kb on - strand, within Xcc-8004.1608.1at 1544.161 kb on - strand, within Xcc-8004.1608.1at 1544.474 kb on + strand, within Xcc-8004.1608.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 16.67 mM (C)
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1,539,139 + Xcc-8004.1605.1 0.63 +0.3
1,539,139 + Xcc-8004.1605.1 0.63 +0.4
1,539,139 + Xcc-8004.1605.1 0.63 +2.7
1,539,140 - Xcc-8004.1605.1 0.63 -1.7
1,539,140 - Xcc-8004.1605.1 0.63 +0.9
1,539,140 - Xcc-8004.1605.1 0.63 -0.1
1,539,140 - Xcc-8004.1605.1 0.63 +0.2
1,539,208 + Xcc-8004.1605.1 0.75 -0.0
1,539,220 + Xcc-8004.1605.1 0.77 -1.4
1,539,220 + Xcc-8004.1605.1 0.77 -0.3
1,539,220 + Xcc-8004.1605.1 0.77 +0.1
1,539,220 + Xcc-8004.1605.1 0.77 -2.1
1,539,220 + Xcc-8004.1605.1 0.77 -1.0
1,539,220 + Xcc-8004.1605.1 0.77 +1.9
1,539,221 - Xcc-8004.1605.1 0.77 +0.4
1,539,221 - Xcc-8004.1605.1 0.77 +1.7
1,539,734 + Xcc-8004.1606.1 0.58 +0.0
1,539,734 + Xcc-8004.1606.1 0.58 -2.4
1,539,735 - Xcc-8004.1606.1 0.58 +0.2
1,539,735 - Xcc-8004.1606.1 0.58 -0.5
1,539,735 - Xcc-8004.1606.1 0.58 +1.2
1,539,942 + Xcc-8004.1606.1 0.88 -0.3
1,539,942 + Xcc-8004.1606.1 0.88 +0.4
1,539,942 + Xcc-8004.1606.1 0.88 -1.5
1,539,943 - Xcc-8004.1606.1 0.88 +0.8
1,540,032 + -0.1
1,540,032 + -0.0
1,540,268 + -0.5
1,540,283 - -1.0
1,540,385 + +2.8
1,540,385 + -0.4
1,540,385 + +1.2
1,540,385 + -0.0
1,540,386 - -1.6
1,540,386 - -1.1
1,540,472 + +0.6
1,540,472 + -0.0
1,540,472 + +2.6
1,540,649 + Xcc-8004.1607.1 0.15 +1.9
1,540,737 + Xcc-8004.1607.1 0.17 +0.2
1,540,737 + Xcc-8004.1607.1 0.17 -0.5
1,540,737 + Xcc-8004.1607.1 0.17 +0.1
1,540,738 - Xcc-8004.1607.1 0.17 +1.6
1,540,823 + Xcc-8004.1607.1 0.20 +3.1
1,540,823 + Xcc-8004.1607.1 0.20 -0.6
1,540,824 - Xcc-8004.1607.1 0.20 +0.6
1,540,824 - Xcc-8004.1607.1 0.20 -0.9
1,540,824 - Xcc-8004.1607.1 0.20 +1.2
1,540,824 - Xcc-8004.1607.1 0.20 +1.5
1,540,824 - Xcc-8004.1607.1 0.20 -0.1
1,540,929 + Xcc-8004.1607.1 0.23 -0.3
1,540,954 + Xcc-8004.1607.1 0.23 -0.2
1,540,954 + Xcc-8004.1607.1 0.23 -0.9
1,540,954 + Xcc-8004.1607.1 0.23 +1.0
1,540,954 + Xcc-8004.1607.1 0.23 +1.0
1,540,955 - Xcc-8004.1607.1 0.24 -0.1
1,540,955 - Xcc-8004.1607.1 0.24 +0.7
1,540,955 - Xcc-8004.1607.1 0.24 +0.2
1,541,026 + Xcc-8004.1607.1 0.25 -0.4
1,541,026 + Xcc-8004.1607.1 0.25 +0.6
1,541,027 - Xcc-8004.1607.1 0.26 +0.6
1,541,087 + Xcc-8004.1607.1 0.27 -0.2
1,541,088 - Xcc-8004.1607.1 0.27 -2.3
1,541,088 - Xcc-8004.1607.1 0.27 +1.0
1,541,110 + Xcc-8004.1607.1 0.28 +1.5
1,541,110 + Xcc-8004.1607.1 0.28 +0.6
1,541,463 - Xcc-8004.1607.1 0.38 -0.3
1,541,463 - Xcc-8004.1607.1 0.38 +0.8
1,541,463 - Xcc-8004.1607.1 0.38 +0.4
1,541,615 + Xcc-8004.1607.1 0.42 +0.7
1,541,615 + Xcc-8004.1607.1 0.42 +0.1
1,541,615 + Xcc-8004.1607.1 0.42 +0.3
1,541,615 + Xcc-8004.1607.1 0.42 +0.4
1,541,615 + Xcc-8004.1607.1 0.42 +0.2
1,541,615 + Xcc-8004.1607.1 0.42 +0.1
1,541,615 + Xcc-8004.1607.1 0.42 +1.5
1,541,615 + Xcc-8004.1607.1 0.42 +0.8
1,541,615 + Xcc-8004.1607.1 0.42 +0.4
1,541,615 + Xcc-8004.1607.1 0.42 -1.0
1,541,615 + Xcc-8004.1607.1 0.42 -0.9
1,541,615 + Xcc-8004.1607.1 0.42 -1.2
1,541,615 + Xcc-8004.1607.1 0.42 +3.8
1,541,615 + Xcc-8004.1607.1 0.42 +0.8
1,541,615 + Xcc-8004.1607.1 0.42 -0.8
1,541,615 + Xcc-8004.1607.1 0.42 +0.1
1,541,615 + Xcc-8004.1607.1 0.42 +0.3
1,541,615 + Xcc-8004.1607.1 0.42 +0.4
1,541,616 - Xcc-8004.1607.1 0.42 -0.2
1,541,616 - Xcc-8004.1607.1 0.42 +1.6
1,541,616 - Xcc-8004.1607.1 0.42 +0.1
1,541,616 - Xcc-8004.1607.1 0.42 +0.4
1,541,616 - Xcc-8004.1607.1 0.42 +0.8
1,541,616 - Xcc-8004.1607.1 0.42 +1.5
1,541,616 - Xcc-8004.1607.1 0.42 +1.0
1,541,616 - Xcc-8004.1607.1 0.42 -3.1
1,541,616 - Xcc-8004.1607.1 0.42 -1.2
1,541,616 - Xcc-8004.1607.1 0.42 -0.0
1,541,616 - Xcc-8004.1607.1 0.42 -1.3
1,541,616 - Xcc-8004.1607.1 0.42 +0.1
1,541,616 - Xcc-8004.1607.1 0.42 +1.7
1,541,616 - Xcc-8004.1607.1 0.42 +3.1
1,541,616 - Xcc-8004.1607.1 0.42 +1.4
1,541,616 - Xcc-8004.1607.1 0.42 -0.3
1,541,616 - Xcc-8004.1607.1 0.42 +1.0
1,542,014 + Xcc-8004.1607.1 0.53 +0.4
1,542,015 - Xcc-8004.1607.1 0.53 -0.1
1,542,180 + Xcc-8004.1607.1 0.58 -0.3
1,542,180 + Xcc-8004.1607.1 0.58 -0.9
1,542,181 - Xcc-8004.1607.1 0.58 +0.1
1,542,302 + Xcc-8004.1607.1 0.61 -0.8
1,542,302 + Xcc-8004.1607.1 0.61 +0.1
1,542,302 + Xcc-8004.1607.1 0.61 +0.4
1,542,303 - Xcc-8004.1607.1 0.61 -0.5
1,542,303 - Xcc-8004.1607.1 0.61 +0.6
1,542,475 + Xcc-8004.1607.1 0.66 +0.9
1,542,475 + Xcc-8004.1607.1 0.66 -0.0
1,542,475 + Xcc-8004.1607.1 0.66 -1.1
1,542,476 - Xcc-8004.1607.1 0.66 -1.0
1,542,476 - Xcc-8004.1607.1 0.66 -0.8
1,542,476 - Xcc-8004.1607.1 0.66 +2.5
1,542,476 - Xcc-8004.1607.1 0.66 +1.0
1,542,476 - Xcc-8004.1607.1 0.66 +0.2
1,542,650 + Xcc-8004.1607.1 0.71 +0.1
1,542,651 - Xcc-8004.1607.1 0.71 +0.1
1,542,651 - Xcc-8004.1607.1 0.71 -0.2
1,543,169 - Xcc-8004.1607.1 0.86 -0.7
1,543,702 - -0.5
1,543,922 + -0.1
1,543,923 - -0.3
1,543,923 - +1.4
1,543,923 - -1.0
1,543,923 - +0.3
1,543,923 - -1.0
1,543,959 - -0.3
1,544,160 + Xcc-8004.1608.1 0.12 -0.2
1,544,160 + Xcc-8004.1608.1 0.12 +0.1
1,544,160 + Xcc-8004.1608.1 0.12 +0.9
1,544,161 - Xcc-8004.1608.1 0.12 -0.1
1,544,161 - Xcc-8004.1608.1 0.12 +0.6
1,544,474 + Xcc-8004.1608.1 0.21 +0.1

Or see this region's nucleotide sequence