Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1442.1

Experiment: Citric Acid 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1440.1 and Xcc-8004.1441.1 are separated by 11 nucleotidesXcc-8004.1441.1 and Xcc-8004.1442.1 are separated by 91 nucleotidesXcc-8004.1442.1 and Xcc-8004.1443.1 overlap by 11 nucleotides Xcc-8004.1440.1: Xcc-8004.1440.1 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 1,380,222 to 1,380,680 Xcc-8004.1440.1 Xcc-8004.1441.1: Xcc-8004.1441.1 - MotA/TolQ/ExbB proton channel family protein, at 1,380,692 to 1,381,471 Xcc-8004.1441.1 Xcc-8004.1442.1: Xcc-8004.1442.1 - Tol biopolymer transport system, TolR protein, at 1,381,563 to 1,382,012 Xcc-8004.1442.1 Xcc-8004.1443.1: Xcc-8004.1443.1 - TolA protein, at 1,382,002 to 1,383,039 Xcc-8004.1443.1 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -1 0 1 2at 1380.655 kb on + strandat 1380.655 kb on + strandat 1380.675 kb on + strandat 1380.678 kb on + strandat 1380.678 kb on + strandat 1380.678 kb on + strandat 1380.678 kb on + strandat 1381.469 kb on + strandat 1381.469 kb on + strandat 1381.469 kb on + strandat 1381.470 kb on - strandat 1381.548 kb on + strandat 1381.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 16.67 mM (C)
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1,380,655 + -0.7
1,380,655 + -0.7
1,380,675 + -0.6
1,380,678 + -0.5
1,380,678 + -1.0
1,380,678 + +0.0
1,380,678 + -0.2
1,381,469 + +0.7
1,381,469 + +0.3
1,381,469 + +0.9
1,381,470 - +2.5
1,381,548 + -1.1
1,381,548 + -1.1

Or see this region's nucleotide sequence