Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3041 and HP15_3042 are separated by 9 nucleotides HP15_3042 and HP15_3043 are separated by 99 nucleotides
HP15_3041: HP15_3041 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,187,935 to 3,188,954
_3041
HP15_3042: HP15_3042 - acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) , at 3,188,964 to 3,190,178
_3042
HP15_3043: HP15_3043 - DNA polymerase III, epsilon subunit, at 3,190,278 to 3,191,738
_3043
Position (kb)
3188
3189
3190
3191 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3188.011 kb on - strand at 3188.060 kb on - strand, within HP15_3041 at 3188.065 kb on - strand, within HP15_3041 at 3188.105 kb on - strand, within HP15_3041 at 3188.126 kb on + strand, within HP15_3041 at 3188.127 kb on - strand, within HP15_3041 at 3188.127 kb on - strand, within HP15_3041 at 3188.290 kb on + strand, within HP15_3041 at 3188.298 kb on - strand, within HP15_3041 at 3188.332 kb on - strand, within HP15_3041 at 3188.357 kb on + strand, within HP15_3041 at 3188.372 kb on - strand, within HP15_3041 at 3188.405 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.475 kb on - strand, within HP15_3041 at 3188.475 kb on - strand, within HP15_3041 at 3188.477 kb on + strand, within HP15_3041 at 3188.548 kb on - strand, within HP15_3041 at 3188.575 kb on + strand, within HP15_3041 at 3188.611 kb on + strand, within HP15_3041 at 3188.619 kb on - strand, within HP15_3041 at 3188.619 kb on - strand, within HP15_3041 at 3188.629 kb on - strand, within HP15_3041 at 3188.647 kb on - strand, within HP15_3041 at 3188.802 kb on - strand, within HP15_3041 at 3188.952 kb on + strand at 3189.059 kb on + strand at 3189.129 kb on - strand, within HP15_3042 at 3189.164 kb on + strand, within HP15_3042 at 3189.198 kb on + strand, within HP15_3042 at 3189.228 kb on - strand, within HP15_3042 at 3189.312 kb on - strand, within HP15_3042 at 3189.350 kb on + strand, within HP15_3042 at 3189.370 kb on - strand, within HP15_3042 at 3189.463 kb on + strand, within HP15_3042 at 3189.463 kb on + strand, within HP15_3042 at 3189.471 kb on - strand, within HP15_3042 at 3189.518 kb on - strand, within HP15_3042 at 3189.583 kb on - strand, within HP15_3042 at 3189.583 kb on - strand, within HP15_3042 at 3189.586 kb on + strand, within HP15_3042 at 3189.596 kb on + strand, within HP15_3042 at 3189.902 kb on - strand, within HP15_3042 at 3190.023 kb on + strand, within HP15_3042 at 3190.023 kb on + strand, within HP15_3042 at 3190.264 kb on - strand at 3190.389 kb on + strand at 3190.543 kb on - strand, within HP15_3043 at 3190.630 kb on + strand, within HP15_3043 at 3190.630 kb on + strand, within HP15_3043 at 3190.638 kb on - strand, within HP15_3043 at 3190.640 kb on + strand, within HP15_3043 at 3190.829 kb on - strand, within HP15_3043 at 3190.887 kb on + strand, within HP15_3043 at 3190.914 kb on - strand, within HP15_3043 at 3190.924 kb on - strand, within HP15_3043 at 3190.964 kb on + strand, within HP15_3043 at 3190.972 kb on - strand, within HP15_3043 at 3190.991 kb on + strand, within HP15_3043 at 3190.991 kb on + strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3191.008 kb on + strand, within HP15_3043 at 3191.010 kb on + strand, within HP15_3043 at 3191.018 kb on - strand, within HP15_3043 at 3191.045 kb on + strand, within HP15_3043 at 3191.116 kb on - strand, within HP15_3043 at 3191.116 kb on - strand, within HP15_3043 at 3191.124 kb on - strand, within HP15_3043 at 3191.134 kb on + strand, within HP15_3043
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,188,011 - +0.1 3,188,060 - HP15_3041 0.12 -0.6 3,188,065 - HP15_3041 0.13 -0.1 3,188,105 - HP15_3041 0.17 -0.3 3,188,126 + HP15_3041 0.19 -1.3 3,188,127 - HP15_3041 0.19 +0.0 3,188,127 - HP15_3041 0.19 -0.7 3,188,290 + HP15_3041 0.35 -2.2 3,188,298 - HP15_3041 0.36 -0.6 3,188,332 - HP15_3041 0.39 -1.8 3,188,357 + HP15_3041 0.41 -1.0 3,188,372 - HP15_3041 0.43 -0.9 3,188,405 + HP15_3041 0.46 -1.1 3,188,467 + HP15_3041 0.52 -3.3 3,188,467 + HP15_3041 0.52 -2.4 3,188,467 + HP15_3041 0.52 -1.7 3,188,467 + HP15_3041 0.52 -3.3 3,188,475 - HP15_3041 0.53 -1.2 3,188,475 - HP15_3041 0.53 -0.5 3,188,477 + HP15_3041 0.53 -1.7 3,188,548 - HP15_3041 0.60 -0.3 3,188,575 + HP15_3041 0.63 -1.6 3,188,611 + HP15_3041 0.66 -2.8 3,188,619 - HP15_3041 0.67 -0.3 3,188,619 - HP15_3041 0.67 -0.9 3,188,629 - HP15_3041 0.68 -1.5 3,188,647 - HP15_3041 0.70 -0.8 3,188,802 - HP15_3041 0.85 -1.0 3,188,952 + -2.3 3,189,059 + -2.8 3,189,129 - HP15_3042 0.14 -2.2 3,189,164 + HP15_3042 0.16 +1.1 3,189,198 + HP15_3042 0.19 -1.8 3,189,228 - HP15_3042 0.22 -3.8 3,189,312 - HP15_3042 0.29 -0.7 3,189,350 + HP15_3042 0.32 -1.3 3,189,370 - HP15_3042 0.33 -1.6 3,189,463 + HP15_3042 0.41 -1.9 3,189,463 + HP15_3042 0.41 -2.3 3,189,471 - HP15_3042 0.42 -2.4 3,189,518 - HP15_3042 0.46 -2.0 3,189,583 - HP15_3042 0.51 -1.4 3,189,583 - HP15_3042 0.51 -2.3 3,189,586 + HP15_3042 0.51 -2.4 3,189,596 + HP15_3042 0.52 -2.3 3,189,902 - HP15_3042 0.77 -2.0 3,190,023 + HP15_3042 0.87 -2.4 3,190,023 + HP15_3042 0.87 -0.3 3,190,264 - +0.9 3,190,389 + +0.0 3,190,543 - HP15_3043 0.18 +0.4 3,190,630 + HP15_3043 0.24 -0.3 3,190,630 + HP15_3043 0.24 -0.1 3,190,638 - HP15_3043 0.25 +1.4 3,190,640 + HP15_3043 0.25 +0.5 3,190,829 - HP15_3043 0.38 -0.1 3,190,887 + HP15_3043 0.42 +0.3 3,190,914 - HP15_3043 0.44 +0.5 3,190,924 - HP15_3043 0.44 +0.4 3,190,964 + HP15_3043 0.47 +0.0 3,190,972 - HP15_3043 0.48 +0.6 3,190,991 + HP15_3043 0.49 -0.9 3,190,991 + HP15_3043 0.49 -0.5 3,190,999 - HP15_3043 0.49 +0.6 3,190,999 - HP15_3043 0.49 -0.4 3,190,999 - HP15_3043 0.49 -0.9 3,190,999 - HP15_3043 0.49 +1.7 3,190,999 - HP15_3043 0.49 +1.0 3,191,008 + HP15_3043 0.50 +0.6 3,191,010 + HP15_3043 0.50 +1.3 3,191,018 - HP15_3043 0.51 +0.4 3,191,045 + HP15_3043 0.52 -0.7 3,191,116 - HP15_3043 0.57 +0.4 3,191,116 - HP15_3043 0.57 +1.7 3,191,124 - HP15_3043 0.58 +0.4 3,191,134 + HP15_3043 0.59 +0.4
Or see this region's nucleotide sequence