Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2637 and HP15_2638 are separated by 206 nucleotides HP15_2638 and HP15_2639 are separated by 15 nucleotides HP15_2639 and HP15_2640 are separated by 100 nucleotides HP15_2640 and HP15_2641 overlap by 11 nucleotides HP15_2641 and HP15_2642 are separated by 22 nucleotides
HP15_2637: HP15_2637 - long-chain-fatty-acid-CoA ligase, at 2,787,421 to 2,789,103
_2637
HP15_2638: HP15_2638 - hypothetical protein, at 2,789,310 to 2,789,429
_2638
HP15_2639: HP15_2639 - transcriptional regulator, AsnC family protein, at 2,789,445 to 2,789,873
_2639
HP15_2640: HP15_2640 - arginine/ornithine succinyltransferase, at 2,789,974 to 2,791,113
_2640
HP15_2641: HP15_2641 - conserved hypothetical protein, at 2,791,103 to 2,791,909
_2641
HP15_2642: HP15_2642 - protein-L-isoaspartate O-methyltransferase, at 2,791,932 to 2,792,588
_2642
Position (kb)
2789
2790
2791
2792 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2789.017 kb on - strand at 2789.180 kb on + strand at 2789.191 kb on + strand at 2789.283 kb on - strand at 2789.285 kb on + strand at 2789.292 kb on - strand at 2789.293 kb on - strand at 2789.378 kb on + strand, within HP15_2638 at 2789.497 kb on + strand, within HP15_2639 at 2789.552 kb on - strand, within HP15_2639 at 2789.629 kb on + strand, within HP15_2639 at 2789.637 kb on - strand, within HP15_2639 at 2789.743 kb on + strand, within HP15_2639 at 2789.751 kb on - strand, within HP15_2639 at 2789.763 kb on + strand, within HP15_2639 at 2789.763 kb on + strand, within HP15_2639 at 2789.763 kb on + strand, within HP15_2639 at 2789.763 kb on + strand, within HP15_2639 at 2789.820 kb on - strand, within HP15_2639 at 2789.858 kb on + strand at 2789.858 kb on + strand at 2789.858 kb on + strand at 2789.866 kb on - strand at 2789.866 kb on - strand at 2790.020 kb on - strand at 2790.091 kb on + strand, within HP15_2640 at 2790.099 kb on - strand, within HP15_2640 at 2790.099 kb on - strand, within HP15_2640 at 2790.118 kb on + strand, within HP15_2640 at 2790.118 kb on + strand, within HP15_2640 at 2790.175 kb on + strand, within HP15_2640 at 2790.175 kb on + strand, within HP15_2640 at 2790.232 kb on + strand, within HP15_2640 at 2790.232 kb on + strand, within HP15_2640 at 2790.325 kb on - strand, within HP15_2640 at 2790.325 kb on - strand, within HP15_2640 at 2790.524 kb on + strand, within HP15_2640 at 2790.539 kb on + strand, within HP15_2640 at 2790.568 kb on + strand, within HP15_2640 at 2790.612 kb on - strand, within HP15_2640 at 2790.630 kb on - strand, within HP15_2640 at 2790.811 kb on - strand, within HP15_2640 at 2790.914 kb on + strand, within HP15_2640 at 2790.914 kb on + strand, within HP15_2640 at 2790.934 kb on + strand, within HP15_2640 at 2790.961 kb on - strand, within HP15_2640 at 2791.038 kb on + strand at 2791.038 kb on + strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.049 kb on + strand at 2791.112 kb on + strand at 2791.112 kb on + strand at 2791.120 kb on - strand at 2791.120 kb on - strand at 2791.385 kb on + strand, within HP15_2641 at 2791.466 kb on - strand, within HP15_2641 at 2791.467 kb on - strand, within HP15_2641 at 2791.479 kb on - strand, within HP15_2641 at 2791.530 kb on + strand, within HP15_2641 at 2791.630 kb on + strand, within HP15_2641 at 2791.675 kb on - strand, within HP15_2641 at 2791.965 kb on + strand at 2791.973 kb on - strand at 2792.045 kb on + strand, within HP15_2642 at 2792.045 kb on + strand, within HP15_2642 at 2792.059 kb on + strand, within HP15_2642 at 2792.059 kb on + strand, within HP15_2642
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,789,017 - +1.2 2,789,180 + -0.7 2,789,191 + +0.1 2,789,283 - -1.0 2,789,285 + -0.7 2,789,292 - -0.1 2,789,293 - +0.3 2,789,378 + HP15_2638 0.57 +0.3 2,789,497 + HP15_2639 0.12 -0.6 2,789,552 - HP15_2639 0.25 +0.1 2,789,629 + HP15_2639 0.43 +0.6 2,789,637 - HP15_2639 0.45 +0.4 2,789,743 + HP15_2639 0.69 -0.2 2,789,751 - HP15_2639 0.71 -0.1 2,789,763 + HP15_2639 0.74 +0.2 2,789,763 + HP15_2639 0.74 -0.6 2,789,763 + HP15_2639 0.74 +0.2 2,789,763 + HP15_2639 0.74 +0.4 2,789,820 - HP15_2639 0.87 -0.4 2,789,858 + -0.1 2,789,858 + +0.5 2,789,858 + +1.6 2,789,866 - +0.5 2,789,866 - +0.5 2,790,020 - -0.1 2,790,091 + HP15_2640 0.10 -0.3 2,790,099 - HP15_2640 0.11 +1.8 2,790,099 - HP15_2640 0.11 -0.1 2,790,118 + HP15_2640 0.13 +0.6 2,790,118 + HP15_2640 0.13 +2.2 2,790,175 + HP15_2640 0.18 +0.1 2,790,175 + HP15_2640 0.18 -0.7 2,790,232 + HP15_2640 0.23 +0.6 2,790,232 + HP15_2640 0.23 -0.0 2,790,325 - HP15_2640 0.31 +0.3 2,790,325 - HP15_2640 0.31 -1.0 2,790,524 + HP15_2640 0.48 -0.5 2,790,539 + HP15_2640 0.50 +0.2 2,790,568 + HP15_2640 0.52 -0.3 2,790,612 - HP15_2640 0.56 -0.1 2,790,630 - HP15_2640 0.58 -0.4 2,790,811 - HP15_2640 0.73 -0.7 2,790,914 + HP15_2640 0.82 +0.4 2,790,914 + HP15_2640 0.82 +0.4 2,790,934 + HP15_2640 0.84 -0.0 2,790,961 - HP15_2640 0.87 -0.1 2,791,038 + +1.0 2,791,038 + -0.1 2,791,046 - +0.2 2,791,046 - +0.2 2,791,046 - +0.2 2,791,046 - +0.1 2,791,049 + +0.3 2,791,112 + +1.2 2,791,112 + -1.4 2,791,120 - +1.8 2,791,120 - +0.2 2,791,385 + HP15_2641 0.35 +0.1 2,791,466 - HP15_2641 0.45 +1.1 2,791,467 - HP15_2641 0.45 -0.3 2,791,479 - HP15_2641 0.47 -1.4 2,791,530 + HP15_2641 0.53 +0.2 2,791,630 + HP15_2641 0.65 +0.1 2,791,675 - HP15_2641 0.71 -2.0 2,791,965 + -0.8 2,791,973 - +0.3 2,792,045 + HP15_2642 0.17 -0.4 2,792,045 + HP15_2642 0.17 +0.5 2,792,059 + HP15_2642 0.19 +0.3 2,792,059 + HP15_2642 0.19 -0.3
Or see this region's nucleotide sequence