Strain Fitness in Marinobacter adhaerens HP15 around HP15_2640

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2637 and HP15_2638 are separated by 206 nucleotidesHP15_2638 and HP15_2639 are separated by 15 nucleotidesHP15_2639 and HP15_2640 are separated by 100 nucleotidesHP15_2640 and HP15_2641 overlap by 11 nucleotidesHP15_2641 and HP15_2642 are separated by 22 nucleotides HP15_2637: HP15_2637 - long-chain-fatty-acid-CoA ligase, at 2,787,421 to 2,789,103 _2637 HP15_2638: HP15_2638 - hypothetical protein, at 2,789,310 to 2,789,429 _2638 HP15_2639: HP15_2639 - transcriptional regulator, AsnC family protein, at 2,789,445 to 2,789,873 _2639 HP15_2640: HP15_2640 - arginine/ornithine succinyltransferase, at 2,789,974 to 2,791,113 _2640 HP15_2641: HP15_2641 - conserved hypothetical protein, at 2,791,103 to 2,791,909 _2641 HP15_2642: HP15_2642 - protein-L-isoaspartate O-methyltransferase, at 2,791,932 to 2,792,588 _2642 Position (kb) 2789 2790 2791 2792Strain fitness (log2 ratio) -2 -1 0 1 2at 2789.017 kb on - strandat 2789.180 kb on + strandat 2789.191 kb on + strandat 2789.283 kb on - strandat 2789.285 kb on + strandat 2789.292 kb on - strandat 2789.293 kb on - strandat 2789.378 kb on + strand, within HP15_2638at 2789.497 kb on + strand, within HP15_2639at 2789.552 kb on - strand, within HP15_2639at 2789.629 kb on + strand, within HP15_2639at 2789.637 kb on - strand, within HP15_2639at 2789.743 kb on + strand, within HP15_2639at 2789.751 kb on - strand, within HP15_2639at 2789.763 kb on + strand, within HP15_2639at 2789.763 kb on + strand, within HP15_2639at 2789.763 kb on + strand, within HP15_2639at 2789.763 kb on + strand, within HP15_2639at 2789.820 kb on - strand, within HP15_2639at 2789.858 kb on + strandat 2789.858 kb on + strandat 2789.858 kb on + strandat 2789.866 kb on - strandat 2789.866 kb on - strandat 2790.020 kb on - strandat 2790.091 kb on + strand, within HP15_2640at 2790.099 kb on - strand, within HP15_2640at 2790.099 kb on - strand, within HP15_2640at 2790.118 kb on + strand, within HP15_2640at 2790.118 kb on + strand, within HP15_2640at 2790.175 kb on + strand, within HP15_2640at 2790.175 kb on + strand, within HP15_2640at 2790.232 kb on + strand, within HP15_2640at 2790.232 kb on + strand, within HP15_2640at 2790.325 kb on - strand, within HP15_2640at 2790.325 kb on - strand, within HP15_2640at 2790.524 kb on + strand, within HP15_2640at 2790.539 kb on + strand, within HP15_2640at 2790.568 kb on + strand, within HP15_2640at 2790.612 kb on - strand, within HP15_2640at 2790.630 kb on - strand, within HP15_2640at 2790.811 kb on - strand, within HP15_2640at 2790.914 kb on + strand, within HP15_2640at 2790.914 kb on + strand, within HP15_2640at 2790.934 kb on + strand, within HP15_2640at 2790.961 kb on - strand, within HP15_2640at 2791.038 kb on + strandat 2791.038 kb on + strandat 2791.046 kb on - strandat 2791.046 kb on - strandat 2791.046 kb on - strandat 2791.046 kb on - strandat 2791.049 kb on + strandat 2791.112 kb on + strandat 2791.112 kb on + strandat 2791.120 kb on - strandat 2791.120 kb on - strandat 2791.385 kb on + strand, within HP15_2641at 2791.466 kb on - strand, within HP15_2641at 2791.467 kb on - strand, within HP15_2641at 2791.479 kb on - strand, within HP15_2641at 2791.530 kb on + strand, within HP15_2641at 2791.630 kb on + strand, within HP15_2641at 2791.675 kb on - strand, within HP15_2641at 2791.965 kb on + strandat 2791.973 kb on - strandat 2792.045 kb on + strand, within HP15_2642at 2792.045 kb on + strand, within HP15_2642at 2792.059 kb on + strand, within HP15_2642at 2792.059 kb on + strand, within HP15_2642

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,789,017 - +1.2
2,789,180 + -0.7
2,789,191 + +0.1
2,789,283 - -1.0
2,789,285 + -0.7
2,789,292 - -0.1
2,789,293 - +0.3
2,789,378 + HP15_2638 0.57 +0.3
2,789,497 + HP15_2639 0.12 -0.6
2,789,552 - HP15_2639 0.25 +0.1
2,789,629 + HP15_2639 0.43 +0.6
2,789,637 - HP15_2639 0.45 +0.4
2,789,743 + HP15_2639 0.69 -0.2
2,789,751 - HP15_2639 0.71 -0.1
2,789,763 + HP15_2639 0.74 +0.2
2,789,763 + HP15_2639 0.74 -0.6
2,789,763 + HP15_2639 0.74 +0.2
2,789,763 + HP15_2639 0.74 +0.4
2,789,820 - HP15_2639 0.87 -0.4
2,789,858 + -0.1
2,789,858 + +0.5
2,789,858 + +1.6
2,789,866 - +0.5
2,789,866 - +0.5
2,790,020 - -0.1
2,790,091 + HP15_2640 0.10 -0.3
2,790,099 - HP15_2640 0.11 +1.8
2,790,099 - HP15_2640 0.11 -0.1
2,790,118 + HP15_2640 0.13 +0.6
2,790,118 + HP15_2640 0.13 +2.2
2,790,175 + HP15_2640 0.18 +0.1
2,790,175 + HP15_2640 0.18 -0.7
2,790,232 + HP15_2640 0.23 +0.6
2,790,232 + HP15_2640 0.23 -0.0
2,790,325 - HP15_2640 0.31 +0.3
2,790,325 - HP15_2640 0.31 -1.0
2,790,524 + HP15_2640 0.48 -0.5
2,790,539 + HP15_2640 0.50 +0.2
2,790,568 + HP15_2640 0.52 -0.3
2,790,612 - HP15_2640 0.56 -0.1
2,790,630 - HP15_2640 0.58 -0.4
2,790,811 - HP15_2640 0.73 -0.7
2,790,914 + HP15_2640 0.82 +0.4
2,790,914 + HP15_2640 0.82 +0.4
2,790,934 + HP15_2640 0.84 -0.0
2,790,961 - HP15_2640 0.87 -0.1
2,791,038 + +1.0
2,791,038 + -0.1
2,791,046 - +0.2
2,791,046 - +0.2
2,791,046 - +0.2
2,791,046 - +0.1
2,791,049 + +0.3
2,791,112 + +1.2
2,791,112 + -1.4
2,791,120 - +1.8
2,791,120 - +0.2
2,791,385 + HP15_2641 0.35 +0.1
2,791,466 - HP15_2641 0.45 +1.1
2,791,467 - HP15_2641 0.45 -0.3
2,791,479 - HP15_2641 0.47 -1.4
2,791,530 + HP15_2641 0.53 +0.2
2,791,630 + HP15_2641 0.65 +0.1
2,791,675 - HP15_2641 0.71 -2.0
2,791,965 + -0.8
2,791,973 - +0.3
2,792,045 + HP15_2642 0.17 -0.4
2,792,045 + HP15_2642 0.17 +0.5
2,792,059 + HP15_2642 0.19 +0.3
2,792,059 + HP15_2642 0.19 -0.3

Or see this region's nucleotide sequence