Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16740 and BWI76_RS16745 are separated by 106 nucleotides BWI76_RS16745 and BWI76_RS16750 are separated by 10 nucleotides
BWI76_RS16740: BWI76_RS16740 - transcriptional regulator, at 3,467,493 to 3,468,365
_RS16740
BWI76_RS16745: BWI76_RS16745 - alpha-acetolactate decarboxylase, at 3,468,472 to 3,469,251
_RS16745
BWI76_RS16750: BWI76_RS16750 - acetolactate synthase, at 3,469,262 to 3,470,941
_RS16750
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-1
0
1
2 at 3467.542 kb on - strand at 3467.583 kb on - strand, within BWI76_RS16740 at 3467.764 kb on - strand, within BWI76_RS16740 at 3468.038 kb on + strand, within BWI76_RS16740 at 3468.038 kb on + strand, within BWI76_RS16740 at 3468.205 kb on - strand at 3468.518 kb on - strand at 3468.524 kb on - strand at 3468.549 kb on - strand at 3468.559 kb on + strand, within BWI76_RS16745 at 3468.576 kb on - strand, within BWI76_RS16745 at 3468.576 kb on - strand, within BWI76_RS16745 at 3468.585 kb on + strand, within BWI76_RS16745 at 3468.585 kb on + strand, within BWI76_RS16745 at 3468.800 kb on + strand, within BWI76_RS16745 at 3469.030 kb on - strand, within BWI76_RS16745 at 3469.079 kb on + strand, within BWI76_RS16745 at 3469.307 kb on - strand at 3469.523 kb on - strand, within BWI76_RS16750 at 3469.701 kb on - strand, within BWI76_RS16750 at 3469.998 kb on - strand, within BWI76_RS16750
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,467,542 - +0.9 3,467,583 - BWI76_RS16740 0.10 +0.8 3,467,764 - BWI76_RS16740 0.31 +0.7 3,468,038 + BWI76_RS16740 0.62 +0.3 3,468,038 + BWI76_RS16740 0.62 +0.4 3,468,205 - +1.4 3,468,518 - +0.7 3,468,524 - +2.2 3,468,549 - -0.2 3,468,559 + BWI76_RS16745 0.11 +0.7 3,468,576 - BWI76_RS16745 0.13 +0.4 3,468,576 - BWI76_RS16745 0.13 +0.8 3,468,585 + BWI76_RS16745 0.14 +0.1 3,468,585 + BWI76_RS16745 0.14 +0.5 3,468,800 + BWI76_RS16745 0.42 +0.8 3,469,030 - BWI76_RS16745 0.72 +1.1 3,469,079 + BWI76_RS16745 0.78 +0.8 3,469,307 - +0.2 3,469,523 - BWI76_RS16750 0.16 +0.0 3,469,701 - BWI76_RS16750 0.26 -0.9 3,469,998 - BWI76_RS16750 0.44 -0.1
Or see this region's nucleotide sequence