Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29885 and AO356_29890 are separated by 289 nucleotides AO356_29890 and AO356_29895 are separated by 407 nucleotides
AO356_29885: AO356_29885 - chemotaxis protein, at 6,949,436 to 6,950,578
_29885
AO356_29890: AO356_29890 - phosphodiesterase, at 6,950,868 to 6,952,121
_29890
AO356_29895: AO356_29895 - AraC family transcriptional regulator, at 6,952,529 to 6,953,494
_29895
Position (kb)
6950
6951
6952
6953 Strain fitness (log2 ratio)
-2
-1
0
1 at 6950.600 kb on + strand at 6950.755 kb on - strand at 6950.774 kb on + strand at 6950.787 kb on - strand at 6950.843 kb on + strand at 6951.131 kb on + strand, within AO356_29890 at 6951.131 kb on + strand, within AO356_29890 at 6951.132 kb on - strand, within AO356_29890 at 6951.132 kb on - strand, within AO356_29890 at 6951.132 kb on - strand, within AO356_29890 at 6951.259 kb on + strand, within AO356_29890 at 6951.259 kb on + strand, within AO356_29890 at 6951.260 kb on - strand, within AO356_29890 at 6951.260 kb on - strand, within AO356_29890 at 6951.260 kb on - strand, within AO356_29890 at 6951.260 kb on - strand, within AO356_29890 at 6951.260 kb on - strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.261 kb on + strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.262 kb on - strand, within AO356_29890 at 6951.281 kb on + strand, within AO356_29890 at 6951.317 kb on + strand, within AO356_29890 at 6951.318 kb on - strand, within AO356_29890 at 6951.446 kb on - strand, within AO356_29890 at 6951.558 kb on + strand, within AO356_29890 at 6951.559 kb on - strand, within AO356_29890 at 6951.616 kb on + strand, within AO356_29890 at 6951.616 kb on + strand, within AO356_29890 at 6951.616 kb on + strand, within AO356_29890 at 6951.616 kb on + strand, within AO356_29890 at 6951.617 kb on - strand, within AO356_29890 at 6951.617 kb on - strand, within AO356_29890 at 6951.620 kb on + strand, within AO356_29890 at 6951.620 kb on + strand, within AO356_29890 at 6951.621 kb on - strand, within AO356_29890 at 6951.621 kb on - strand, within AO356_29890 at 6951.621 kb on - strand, within AO356_29890 at 6951.623 kb on - strand, within AO356_29890 at 6951.675 kb on + strand, within AO356_29890 at 6951.676 kb on - strand, within AO356_29890 at 6951.725 kb on + strand, within AO356_29890 at 6952.065 kb on + strand at 6952.078 kb on + strand at 6952.078 kb on + strand at 6952.079 kb on - strand at 6952.079 kb on - strand at 6952.079 kb on - strand at 6952.079 kb on - strand at 6952.139 kb on + strand at 6952.231 kb on + strand at 6952.272 kb on - strand at 6952.275 kb on + strand at 6952.275 kb on + strand at 6952.276 kb on - strand at 6952.280 kb on + strand at 6952.423 kb on + strand at 6952.424 kb on - strand at 6952.489 kb on - strand at 6952.666 kb on + strand, within AO356_29895 at 6952.666 kb on + strand, within AO356_29895 at 6952.704 kb on + strand, within AO356_29895 at 6952.804 kb on + strand, within AO356_29895 at 6952.815 kb on + strand, within AO356_29895 at 6952.816 kb on - strand, within AO356_29895 at 6952.816 kb on - strand, within AO356_29895 at 6952.917 kb on + strand, within AO356_29895 at 6952.917 kb on + strand, within AO356_29895 at 6952.917 kb on + strand, within AO356_29895 at 6952.917 kb on + strand, within AO356_29895 at 6952.917 kb on + strand, within AO356_29895 at 6952.917 kb on + strand, within AO356_29895 at 6952.918 kb on - strand, within AO356_29895 at 6952.918 kb on - strand, within AO356_29895 at 6952.919 kb on + strand, within AO356_29895 at 6952.919 kb on + strand, within AO356_29895
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine remove 6,950,600 + -0.9 6,950,755 - -0.9 6,950,774 + +0.4 6,950,787 - -0.1 6,950,843 + +0.4 6,951,131 + AO356_29890 0.21 -0.9 6,951,131 + AO356_29890 0.21 -2.1 6,951,132 - AO356_29890 0.21 -0.9 6,951,132 - AO356_29890 0.21 +0.1 6,951,132 - AO356_29890 0.21 -0.4 6,951,259 + AO356_29890 0.31 +0.1 6,951,259 + AO356_29890 0.31 +1.1 6,951,260 - AO356_29890 0.31 +1.4 6,951,260 - AO356_29890 0.31 +0.1 6,951,260 - AO356_29890 0.31 +0.4 6,951,260 - AO356_29890 0.31 -0.3 6,951,260 - AO356_29890 0.31 -1.4 6,951,261 + AO356_29890 0.31 +0.5 6,951,261 + AO356_29890 0.31 +1.0 6,951,261 + AO356_29890 0.31 -0.1 6,951,261 + AO356_29890 0.31 +0.7 6,951,261 + AO356_29890 0.31 -0.3 6,951,261 + AO356_29890 0.31 -0.2 6,951,261 + AO356_29890 0.31 +0.1 6,951,261 + AO356_29890 0.31 +1.0 6,951,261 + AO356_29890 0.31 +0.6 6,951,261 + AO356_29890 0.31 +0.1 6,951,261 + AO356_29890 0.31 -1.1 6,951,261 + AO356_29890 0.31 +1.2 6,951,262 - AO356_29890 0.31 +0.4 6,951,262 - AO356_29890 0.31 -0.8 6,951,262 - AO356_29890 0.31 -0.4 6,951,262 - AO356_29890 0.31 -1.0 6,951,262 - AO356_29890 0.31 +0.3 6,951,262 - AO356_29890 0.31 +0.2 6,951,262 - AO356_29890 0.31 -0.9 6,951,281 + AO356_29890 0.33 +0.3 6,951,317 + AO356_29890 0.36 -0.4 6,951,318 - AO356_29890 0.36 +0.9 6,951,446 - AO356_29890 0.46 +0.1 6,951,558 + AO356_29890 0.55 -0.0 6,951,559 - AO356_29890 0.55 +0.1 6,951,616 + AO356_29890 0.60 +0.1 6,951,616 + AO356_29890 0.60 -0.4 6,951,616 + AO356_29890 0.60 +0.3 6,951,616 + AO356_29890 0.60 -0.0 6,951,617 - AO356_29890 0.60 +0.1 6,951,617 - AO356_29890 0.60 +0.4 6,951,620 + AO356_29890 0.60 -1.4 6,951,620 + AO356_29890 0.60 -0.3 6,951,621 - AO356_29890 0.60 -0.2 6,951,621 - AO356_29890 0.60 +0.7 6,951,621 - AO356_29890 0.60 +0.0 6,951,623 - AO356_29890 0.60 -0.9 6,951,675 + AO356_29890 0.64 +0.7 6,951,676 - AO356_29890 0.64 +0.1 6,951,725 + AO356_29890 0.68 -0.1 6,952,065 + -0.6 6,952,078 + -0.7 6,952,078 + -1.1 6,952,079 - +0.9 6,952,079 - +0.2 6,952,079 - +0.5 6,952,079 - +0.9 6,952,139 + -1.6 6,952,231 + -0.1 6,952,272 - +0.4 6,952,275 + -0.5 6,952,275 + +0.5 6,952,276 - +0.9 6,952,280 + +0.3 6,952,423 + +0.7 6,952,424 - +0.4 6,952,489 - -0.6 6,952,666 + AO356_29895 0.14 -0.9 6,952,666 + AO356_29895 0.14 +1.7 6,952,704 + AO356_29895 0.18 -1.3 6,952,804 + AO356_29895 0.28 +0.3 6,952,815 + AO356_29895 0.30 -0.5 6,952,816 - AO356_29895 0.30 -0.7 6,952,816 - AO356_29895 0.30 +1.4 6,952,917 + AO356_29895 0.40 +0.6 6,952,917 + AO356_29895 0.40 -1.0 6,952,917 + AO356_29895 0.40 -1.0 6,952,917 + AO356_29895 0.40 -0.4 6,952,917 + AO356_29895 0.40 +0.3 6,952,917 + AO356_29895 0.40 -0.1 6,952,918 - AO356_29895 0.40 +0.0 6,952,918 - AO356_29895 0.40 +0.1 6,952,919 + AO356_29895 0.40 +0.2 6,952,919 + AO356_29895 0.40 -1.1
Or see this region's nucleotide sequence