Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29330

Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_29325 and AO356_29330 are separated by 144 nucleotidesAO356_29330 and AO356_29335 are separated by 46 nucleotidesAO356_29335 and AO356_29340 are separated by 34 nucleotides AO356_29325: AO356_29325 - TonB-dependent receptor, at 6,820,041 to 6,822,173 _29325 AO356_29330: AO356_29330 - ABC transporter substrate-binding protein, at 6,822,318 to 6,823,295 _29330 AO356_29335: AO356_29335 - sugar dehydrogenase, at 6,823,342 to 6,824,103 _29335 AO356_29340: AO356_29340 - multidrug DMT transporter permease, at 6,824,138 to 6,824,965 _29340 Position (kb) 6822 6823 6824Strain fitness (log2 ratio) -2 -1 0 1 2at 6821.323 kb on - strand, within AO356_29325at 6821.445 kb on + strand, within AO356_29325at 6821.446 kb on - strand, within AO356_29325at 6821.451 kb on + strand, within AO356_29325at 6821.451 kb on + strand, within AO356_29325at 6821.451 kb on + strand, within AO356_29325at 6821.611 kb on - strand, within AO356_29325at 6821.611 kb on - strand, within AO356_29325at 6821.620 kb on - strand, within AO356_29325at 6821.698 kb on - strand, within AO356_29325at 6821.838 kb on + strand, within AO356_29325at 6821.875 kb on - strand, within AO356_29325at 6821.875 kb on - strand, within AO356_29325at 6822.012 kb on + strandat 6822.013 kb on - strandat 6822.121 kb on - strandat 6822.121 kb on - strandat 6822.654 kb on + strand, within AO356_29330at 6822.654 kb on + strand, within AO356_29330at 6822.655 kb on - strand, within AO356_29330at 6822.655 kb on - strand, within AO356_29330at 6822.655 kb on - strand, within AO356_29330at 6822.841 kb on - strand, within AO356_29330at 6822.881 kb on + strand, within AO356_29330at 6822.978 kb on + strand, within AO356_29330at 6822.979 kb on - strand, within AO356_29330at 6822.979 kb on - strand, within AO356_29330at 6822.979 kb on - strand, within AO356_29330at 6822.987 kb on + strand, within AO356_29330at 6822.990 kb on + strand, within AO356_29330at 6822.991 kb on - strand, within AO356_29330at 6823.042 kb on + strand, within AO356_29330at 6823.042 kb on + strand, within AO356_29330at 6823.044 kb on + strand, within AO356_29330at 6823.045 kb on - strand, within AO356_29330at 6823.171 kb on - strand, within AO356_29330at 6823.186 kb on + strand, within AO356_29330at 6823.343 kb on + strandat 6823.343 kb on + strandat 6823.344 kb on - strandat 6823.517 kb on + strand, within AO356_29335at 6823.517 kb on + strand, within AO356_29335at 6823.517 kb on + strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.518 kb on - strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.521 kb on + strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.522 kb on - strand, within AO356_29335at 6823.629 kb on - strand, within AO356_29335at 6823.629 kb on - strand, within AO356_29335at 6823.791 kb on + strand, within AO356_29335at 6823.991 kb on + strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335at 6823.992 kb on - strand, within AO356_29335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
remove
6,821,323 - AO356_29325 0.60 +0.5
6,821,445 + AO356_29325 0.66 +0.1
6,821,446 - AO356_29325 0.66 -0.2
6,821,451 + AO356_29325 0.66 -0.2
6,821,451 + AO356_29325 0.66 +0.7
6,821,451 + AO356_29325 0.66 -0.7
6,821,611 - AO356_29325 0.74 +0.7
6,821,611 - AO356_29325 0.74 +1.4
6,821,620 - AO356_29325 0.74 +1.1
6,821,698 - AO356_29325 0.78 +0.5
6,821,838 + AO356_29325 0.84 +1.4
6,821,875 - AO356_29325 0.86 +0.7
6,821,875 - AO356_29325 0.86 -0.3
6,822,012 + +1.2
6,822,013 - +0.1
6,822,121 - -0.2
6,822,121 - -0.5
6,822,654 + AO356_29330 0.34 -0.5
6,822,654 + AO356_29330 0.34 -1.2
6,822,655 - AO356_29330 0.34 -0.4
6,822,655 - AO356_29330 0.34 -0.2
6,822,655 - AO356_29330 0.34 -0.7
6,822,841 - AO356_29330 0.53 +0.7
6,822,881 + AO356_29330 0.58 -0.4
6,822,978 + AO356_29330 0.67 +0.8
6,822,979 - AO356_29330 0.68 +0.6
6,822,979 - AO356_29330 0.68 +0.3
6,822,979 - AO356_29330 0.68 +0.1
6,822,987 + AO356_29330 0.68 -0.2
6,822,990 + AO356_29330 0.69 +0.3
6,822,991 - AO356_29330 0.69 -0.1
6,823,042 + AO356_29330 0.74 -0.2
6,823,042 + AO356_29330 0.74 -0.2
6,823,044 + AO356_29330 0.74 +1.8
6,823,045 - AO356_29330 0.74 -0.2
6,823,171 - AO356_29330 0.87 +0.3
6,823,186 + AO356_29330 0.89 -0.9
6,823,343 + -0.5
6,823,343 + +1.0
6,823,344 - +0.7
6,823,517 + AO356_29335 0.23 -0.8
6,823,517 + AO356_29335 0.23 +0.5
6,823,517 + AO356_29335 0.23 +0.3
6,823,518 - AO356_29335 0.23 +0.1
6,823,518 - AO356_29335 0.23 +0.1
6,823,518 - AO356_29335 0.23 -1.2
6,823,518 - AO356_29335 0.23 +0.2
6,823,518 - AO356_29335 0.23 -0.2
6,823,518 - AO356_29335 0.23 -1.9
6,823,521 + AO356_29335 0.23 -0.5
6,823,521 + AO356_29335 0.23 +1.5
6,823,521 + AO356_29335 0.23 +0.1
6,823,521 + AO356_29335 0.23 +0.4
6,823,521 + AO356_29335 0.23 +0.5
6,823,521 + AO356_29335 0.23 +0.5
6,823,521 + AO356_29335 0.23 +0.0
6,823,521 + AO356_29335 0.23 +0.7
6,823,521 + AO356_29335 0.23 -0.3
6,823,521 + AO356_29335 0.23 -0.0
6,823,522 - AO356_29335 0.24 -0.7
6,823,522 - AO356_29335 0.24 -0.2
6,823,522 - AO356_29335 0.24 -0.2
6,823,522 - AO356_29335 0.24 +0.7
6,823,522 - AO356_29335 0.24 -0.0
6,823,629 - AO356_29335 0.38 +0.5
6,823,629 - AO356_29335 0.38 -0.7
6,823,791 + AO356_29335 0.59 -0.2
6,823,991 + AO356_29335 0.85 +0.3
6,823,992 - AO356_29335 0.85 +0.6
6,823,992 - AO356_29335 0.85 -0.8
6,823,992 - AO356_29335 0.85 +0.4
6,823,992 - AO356_29335 0.85 -0.3
6,823,992 - AO356_29335 0.85 +0.6

Or see this region's nucleotide sequence