Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24800 and AO356_24805 are separated by 509 nucleotides AO356_24805 and AO356_24810 are separated by 214 nucleotides
AO356_24800: AO356_24800 - type II secretion system protein GspF, at 5,607,933 to 5,609,144
_24800
AO356_24805: AO356_24805 - alkaline phosphatase, at 5,609,654 to 5,610,823
_24805
AO356_24810: AO356_24810 - hemagglutinin, at 5,611,038 to 5,623,655
_24810
Position (kb)
5609
5610
5611 Strain fitness (log2 ratio)
-2
-1
0
1 at 5609.069 kb on + strand at 5609.221 kb on + strand at 5609.523 kb on + strand at 5609.523 kb on + strand at 5609.623 kb on + strand at 5609.623 kb on + strand at 5609.623 kb on + strand at 5609.624 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.628 kb on - strand at 5609.659 kb on + strand at 5609.746 kb on + strand at 5609.746 kb on + strand at 5609.747 kb on - strand at 5609.804 kb on + strand, within AO356_24805 at 5609.804 kb on + strand, within AO356_24805 at 5609.805 kb on - strand, within AO356_24805 at 5609.855 kb on + strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5609.946 kb on - strand, within AO356_24805 at 5610.341 kb on + strand, within AO356_24805 at 5610.342 kb on - strand, within AO356_24805 at 5610.342 kb on - strand, within AO356_24805 at 5610.554 kb on + strand, within AO356_24805 at 5610.968 kb on - strand at 5610.968 kb on - strand at 5610.968 kb on - strand at 5611.035 kb on - strand at 5611.035 kb on - strand at 5611.035 kb on - strand at 5611.797 kb on + strand at 5611.797 kb on + strand at 5611.798 kb on - strand at 5611.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine remove 5,609,069 + -0.0 5,609,221 + -0.7 5,609,523 + +0.6 5,609,523 + -0.1 5,609,623 + -0.7 5,609,623 + +0.9 5,609,623 + -0.8 5,609,624 - -0.2 5,609,628 - +1.1 5,609,628 - +0.1 5,609,628 - +0.9 5,609,628 - -0.1 5,609,628 - -1.0 5,609,659 + -0.8 5,609,746 + +0.3 5,609,746 + -0.7 5,609,747 - -0.2 5,609,804 + AO356_24805 0.13 -1.0 5,609,804 + AO356_24805 0.13 -0.5 5,609,805 - AO356_24805 0.13 -1.0 5,609,855 + AO356_24805 0.17 -1.2 5,609,946 - AO356_24805 0.25 -0.0 5,609,946 - AO356_24805 0.25 -0.2 5,609,946 - AO356_24805 0.25 -0.7 5,609,946 - AO356_24805 0.25 +0.5 5,609,946 - AO356_24805 0.25 -1.1 5,610,341 + AO356_24805 0.59 +0.3 5,610,342 - AO356_24805 0.59 -0.7 5,610,342 - AO356_24805 0.59 +0.2 5,610,554 + AO356_24805 0.77 -0.2 5,610,968 - -1.8 5,610,968 - -0.9 5,610,968 - +0.6 5,611,035 - -0.5 5,611,035 - +0.1 5,611,035 - -0.0 5,611,797 + -0.1 5,611,797 + -0.5 5,611,798 - -0.7 5,611,798 - +0.4
Or see this region's nucleotide sequence