Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22100 and AO356_22105 are separated by 169 nucleotides AO356_22105 and AO356_22110 overlap by 4 nucleotides AO356_22110 and AO356_22115 are separated by 59 nucleotides AO356_22115 and AO356_22120 are separated by 176 nucleotides
AO356_22100: AO356_22100 - adenylosuccinate lyase, at 4,947,248 to 4,948,618
_22100
AO356_22105: AO356_22105 - DNA repair protein, at 4,948,788 to 4,949,411
_22105
AO356_22110: AO356_22110 - tRNA 2-thiouridylase, at 4,949,408 to 4,950,532
_22110
AO356_22115: AO356_22115 - NUDIX hydrolase, at 4,950,592 to 4,951,038
_22115
AO356_22120: AO356_22120 - hypothetical protein, at 4,951,215 to 4,952,096
_22120
Position (kb)
4949
4950
4951 Strain fitness (log2 ratio)
-1
0
1 at 4948.664 kb on - strand at 4948.664 kb on - strand at 4948.707 kb on + strand at 4948.707 kb on + strand at 4948.707 kb on + strand at 4948.713 kb on + strand at 4948.714 kb on - strand at 4948.721 kb on + strand at 4948.722 kb on - strand at 4948.722 kb on - strand at 4948.722 kb on - strand at 4948.732 kb on - strand at 4948.732 kb on - strand at 4948.732 kb on - strand at 4948.734 kb on + strand at 4948.735 kb on - strand at 4948.735 kb on - strand at 4948.735 kb on - strand at 4948.735 kb on - strand at 4948.735 kb on - strand at 4948.735 kb on - strand at 4948.789 kb on + strand at 4948.789 kb on + strand at 4948.789 kb on + strand at 4948.790 kb on - strand at 4949.156 kb on - strand, within AO356_22105 at 4950.641 kb on + strand, within AO356_22115 at 4950.641 kb on + strand, within AO356_22115 at 4950.642 kb on - strand, within AO356_22115 at 4950.642 kb on - strand, within AO356_22115 at 4950.750 kb on - strand, within AO356_22115 at 4950.797 kb on + strand, within AO356_22115 at 4950.797 kb on + strand, within AO356_22115 at 4950.797 kb on + strand, within AO356_22115 at 4950.797 kb on + strand, within AO356_22115 at 4950.797 kb on + strand, within AO356_22115 at 4950.797 kb on + strand, within AO356_22115 at 4950.798 kb on - strand, within AO356_22115 at 4950.798 kb on - strand, within AO356_22115 at 4950.798 kb on - strand, within AO356_22115 at 4950.798 kb on - strand, within AO356_22115 at 4950.824 kb on + strand, within AO356_22115 at 4950.825 kb on - strand, within AO356_22115 at 4950.825 kb on - strand, within AO356_22115 at 4950.825 kb on - strand, within AO356_22115 at 4950.825 kb on - strand, within AO356_22115 at 4950.830 kb on + strand, within AO356_22115 at 4950.830 kb on + strand, within AO356_22115 at 4950.830 kb on + strand, within AO356_22115 at 4950.830 kb on + strand, within AO356_22115 at 4950.830 kb on + strand, within AO356_22115 at 4950.831 kb on - strand, within AO356_22115 at 4950.838 kb on + strand, within AO356_22115 at 4950.839 kb on - strand, within AO356_22115 at 4951.050 kb on - strand at 4951.050 kb on - strand at 4951.119 kb on + strand at 4951.119 kb on + strand at 4951.119 kb on + strand at 4951.120 kb on - strand at 4951.120 kb on - strand at 4951.120 kb on - strand at 4951.161 kb on + strand at 4951.161 kb on + strand at 4951.161 kb on + strand at 4951.161 kb on + strand at 4951.161 kb on + strand at 4951.161 kb on + strand at 4951.162 kb on - strand at 4951.162 kb on - strand at 4951.162 kb on - strand at 4951.162 kb on - strand at 4951.162 kb on - strand at 4951.217 kb on - strand at 4951.230 kb on + strand at 4951.259 kb on - strand at 4951.259 kb on - strand at 4951.259 kb on - strand at 4951.292 kb on + strand at 4951.293 kb on - strand at 4951.301 kb on + strand at 4951.301 kb on + strand at 4951.302 kb on - strand at 4951.302 kb on - strand at 4951.323 kb on - strand, within AO356_22120 at 4951.432 kb on + strand, within AO356_22120 at 4951.433 kb on - strand, within AO356_22120 at 4951.433 kb on - strand, within AO356_22120 at 4951.509 kb on + strand, within AO356_22120 at 4951.509 kb on + strand, within AO356_22120 at 4951.509 kb on + strand, within AO356_22120 at 4951.529 kb on - strand, within AO356_22120
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine remove 4,948,664 - -0.6 4,948,664 - -1.0 4,948,707 + -1.0 4,948,707 + -0.4 4,948,707 + -0.2 4,948,713 + -0.0 4,948,714 - +0.1 4,948,721 + -0.2 4,948,722 - -0.8 4,948,722 - +0.7 4,948,722 - -1.0 4,948,732 - -0.8 4,948,732 - -0.6 4,948,732 - +0.7 4,948,734 + -0.5 4,948,735 - +0.8 4,948,735 - +0.2 4,948,735 - +0.5 4,948,735 - -0.8 4,948,735 - +0.4 4,948,735 - -0.2 4,948,789 + -0.6 4,948,789 + -1.0 4,948,789 + +0.0 4,948,790 - -1.2 4,949,156 - AO356_22105 0.59 +1.0 4,950,641 + AO356_22115 0.11 -0.7 4,950,641 + AO356_22115 0.11 +1.2 4,950,642 - AO356_22115 0.11 -0.2 4,950,642 - AO356_22115 0.11 +1.2 4,950,750 - AO356_22115 0.35 +0.3 4,950,797 + AO356_22115 0.46 +0.5 4,950,797 + AO356_22115 0.46 -0.4 4,950,797 + AO356_22115 0.46 +1.0 4,950,797 + AO356_22115 0.46 -0.8 4,950,797 + AO356_22115 0.46 +0.7 4,950,797 + AO356_22115 0.46 -0.3 4,950,798 - AO356_22115 0.46 +1.4 4,950,798 - AO356_22115 0.46 -0.2 4,950,798 - AO356_22115 0.46 -0.5 4,950,798 - AO356_22115 0.46 -0.2 4,950,824 + AO356_22115 0.52 +0.1 4,950,825 - AO356_22115 0.52 -0.0 4,950,825 - AO356_22115 0.52 -1.4 4,950,825 - AO356_22115 0.52 +0.5 4,950,825 - AO356_22115 0.52 -0.4 4,950,830 + AO356_22115 0.53 +0.9 4,950,830 + AO356_22115 0.53 +1.0 4,950,830 + AO356_22115 0.53 +0.5 4,950,830 + AO356_22115 0.53 -0.6 4,950,830 + AO356_22115 0.53 +0.6 4,950,831 - AO356_22115 0.53 -0.2 4,950,838 + AO356_22115 0.55 +0.5 4,950,839 - AO356_22115 0.55 +0.2 4,951,050 - +0.4 4,951,050 - -1.5 4,951,119 + -0.4 4,951,119 + -1.2 4,951,119 + +0.1 4,951,120 - +0.3 4,951,120 - -0.0 4,951,120 - -0.5 4,951,161 + -0.5 4,951,161 + -1.4 4,951,161 + -1.0 4,951,161 + +0.3 4,951,161 + -0.0 4,951,161 + +0.3 4,951,162 - +0.3 4,951,162 - -0.2 4,951,162 - -0.2 4,951,162 - +0.7 4,951,162 - -0.5 4,951,217 - -0.2 4,951,230 + +0.5 4,951,259 - -0.2 4,951,259 - +0.4 4,951,259 - +1.0 4,951,292 + +0.6 4,951,293 - -0.3 4,951,301 + -0.3 4,951,301 + +0.8 4,951,302 - -0.0 4,951,302 - -0.9 4,951,323 - AO356_22120 0.12 -0.0 4,951,432 + AO356_22120 0.25 +0.2 4,951,433 - AO356_22120 0.25 +1.0 4,951,433 - AO356_22120 0.25 -0.9 4,951,509 + AO356_22120 0.33 +1.0 4,951,509 + AO356_22120 0.33 -0.2 4,951,509 + AO356_22120 0.33 +0.7 4,951,529 - AO356_22120 0.36 +0.8
Or see this region's nucleotide sequence