Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08915

Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08910 and AO356_08915 are separated by 616 nucleotidesAO356_08915 and AO356_08920 are separated by 159 nucleotides AO356_08910: AO356_08910 - carbamoyltransferase, at 2,008,295 to 2,010,052 _08910 AO356_08915: AO356_08915 - hypothetical protein, at 2,010,669 to 2,011,055 _08915 AO356_08920: AO356_08920 - serine/threonine protein kinase, at 2,011,215 to 2,012,660 _08920 Position (kb) 2010 2011 2012Strain fitness (log2 ratio) -2 -1 0 1 2at 2009.939 kb on - strandat 2009.992 kb on - strandat 2009.992 kb on - strandat 2009.992 kb on - strandat 2010.068 kb on - strandat 2010.068 kb on - strandat 2010.068 kb on - strandat 2010.068 kb on - strandat 2010.068 kb on - strandat 2010.150 kb on - strandat 2010.152 kb on - strandat 2010.152 kb on - strandat 2010.152 kb on - strandat 2010.206 kb on + strandat 2010.207 kb on - strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.213 kb on + strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.214 kb on - strandat 2010.217 kb on + strandat 2010.217 kb on + strandat 2010.217 kb on + strandat 2010.217 kb on + strandat 2010.217 kb on + strandat 2010.217 kb on + strandat 2010.217 kb on + strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.218 kb on - strandat 2010.324 kb on + strandat 2010.401 kb on + strandat 2010.401 kb on + strandat 2010.401 kb on + strandat 2010.401 kb on + strandat 2010.403 kb on + strandat 2010.404 kb on - strandat 2010.404 kb on - strandat 2010.451 kb on - strandat 2010.484 kb on + strandat 2010.490 kb on - strandat 2010.490 kb on - strandat 2010.534 kb on - strandat 2010.642 kb on + strandat 2010.642 kb on + strandat 2010.678 kb on + strandat 2010.678 kb on + strandat 2010.679 kb on - strandat 2010.679 kb on - strandat 2010.679 kb on - strandat 2010.720 kb on + strand, within AO356_08915at 2010.720 kb on + strand, within AO356_08915at 2010.788 kb on - strand, within AO356_08915at 2010.812 kb on + strand, within AO356_08915at 2010.832 kb on + strand, within AO356_08915at 2010.832 kb on + strand, within AO356_08915at 2010.832 kb on + strand, within AO356_08915at 2010.832 kb on + strand, within AO356_08915at 2010.833 kb on - strand, within AO356_08915at 2010.833 kb on - strand, within AO356_08915at 2010.833 kb on - strand, within AO356_08915at 2010.871 kb on + strand, within AO356_08915at 2010.907 kb on + strand, within AO356_08915at 2010.913 kb on + strand, within AO356_08915at 2010.914 kb on - strand, within AO356_08915at 2010.925 kb on - strand, within AO356_08915at 2010.925 kb on - strand, within AO356_08915at 2010.927 kb on + strand, within AO356_08915at 2010.948 kb on - strand, within AO356_08915at 2011.029 kb on + strandat 2011.032 kb on + strandat 2011.032 kb on + strandat 2011.033 kb on - strandat 2011.040 kb on + strandat 2011.041 kb on - strandat 2011.041 kb on - strandat 2011.045 kb on + strandat 2011.045 kb on + strandat 2011.092 kb on + strandat 2011.092 kb on + strandat 2011.092 kb on + strandat 2011.093 kb on - strandat 2011.093 kb on - strandat 2011.093 kb on - strandat 2011.093 kb on - strandat 2011.094 kb on + strandat 2011.178 kb on + strandat 2011.179 kb on - strandat 2011.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
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2,009,939 - +0.4
2,009,992 - +0.4
2,009,992 - +0.4
2,009,992 - +1.4
2,010,068 - -0.4
2,010,068 - -0.8
2,010,068 - +0.2
2,010,068 - -1.4
2,010,068 - -1.2
2,010,150 - +0.4
2,010,152 - +0.4
2,010,152 - +1.4
2,010,152 - +0.0
2,010,206 + -0.2
2,010,207 - -0.4
2,010,213 + +0.2
2,010,213 + +0.1
2,010,213 + +0.6
2,010,213 + +0.1
2,010,213 + +0.0
2,010,213 + -0.0
2,010,213 + +0.5
2,010,213 + -0.1
2,010,213 + +0.4
2,010,213 + -0.4
2,010,213 + +0.8
2,010,213 + +0.3
2,010,213 + +2.4
2,010,213 + +0.4
2,010,213 + -1.2
2,010,213 + -0.9
2,010,213 + +0.3
2,010,213 + -0.4
2,010,214 - +0.6
2,010,214 - +1.3
2,010,214 - -1.6
2,010,214 - -0.9
2,010,214 - -0.4
2,010,214 - +0.4
2,010,214 - +1.6
2,010,214 - +0.4
2,010,214 - +0.1
2,010,214 - -0.2
2,010,214 - -0.6
2,010,214 - +0.0
2,010,217 + +1.4
2,010,217 + +0.3
2,010,217 + +0.6
2,010,217 + +0.4
2,010,217 + -0.1
2,010,217 + +1.4
2,010,217 + -0.3
2,010,218 - +0.0
2,010,218 - -0.3
2,010,218 - +0.4
2,010,218 - +0.6
2,010,218 - -0.6
2,010,218 - +0.6
2,010,218 - +0.6
2,010,218 - +0.6
2,010,218 - +0.4
2,010,218 - +0.6
2,010,218 - -0.0
2,010,218 - -0.2
2,010,218 - -0.2
2,010,218 - +0.2
2,010,218 - +0.4
2,010,218 - +1.4
2,010,324 + -0.0
2,010,401 + +0.0
2,010,401 + -0.2
2,010,401 + +0.1
2,010,401 + -0.6
2,010,403 + +0.2
2,010,404 - +0.2
2,010,404 - -0.4
2,010,451 - -0.1
2,010,484 + -0.5
2,010,490 - +1.2
2,010,490 - +0.5
2,010,534 - -0.2
2,010,642 + +0.5
2,010,642 + -2.3
2,010,678 + -0.9
2,010,678 + -0.4
2,010,679 - +0.2
2,010,679 - +0.2
2,010,679 - +0.5
2,010,720 + AO356_08915 0.13 +0.6
2,010,720 + AO356_08915 0.13 +0.2
2,010,788 - AO356_08915 0.31 +1.1
2,010,812 + AO356_08915 0.37 +0.2
2,010,832 + AO356_08915 0.42 +0.7
2,010,832 + AO356_08915 0.42 +0.4
2,010,832 + AO356_08915 0.42 +0.1
2,010,832 + AO356_08915 0.42 +0.1
2,010,833 - AO356_08915 0.42 +1.1
2,010,833 - AO356_08915 0.42 +0.9
2,010,833 - AO356_08915 0.42 +0.4
2,010,871 + AO356_08915 0.52 +2.4
2,010,907 + AO356_08915 0.61 -0.2
2,010,913 + AO356_08915 0.63 -0.4
2,010,914 - AO356_08915 0.63 -0.1
2,010,925 - AO356_08915 0.66 +0.3
2,010,925 - AO356_08915 0.66 -1.0
2,010,927 + AO356_08915 0.67 -1.2
2,010,948 - AO356_08915 0.72 +1.3
2,011,029 + -0.6
2,011,032 + +0.1
2,011,032 + +0.4
2,011,033 - -0.6
2,011,040 + +0.6
2,011,041 - -0.5
2,011,041 - -0.3
2,011,045 + -0.1
2,011,045 + +0.2
2,011,092 + +0.5
2,011,092 + -2.2
2,011,092 + +1.7
2,011,093 - +0.8
2,011,093 - +0.4
2,011,093 - +0.4
2,011,093 - +0.2
2,011,094 + +0.9
2,011,178 + -0.2
2,011,179 - +0.4
2,011,179 - +0.1

Or see this region's nucleotide sequence