Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07770 and AO356_07775 are separated by 67 nucleotides AO356_07775 and AO356_07780 are separated by 123 nucleotides
AO356_07770: AO356_07770 - toxin, at 1,735,160 to 1,737,958
_07770
AO356_07775: AO356_07775 - glyoxalase, at 1,738,026 to 1,738,394
_07775
AO356_07780: AO356_07780 - D-aminoacylase, at 1,738,518 to 1,739,990
_07780
Position (kb)
1738
1739 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1737.080 kb on + strand, within AO356_07770 at 1737.080 kb on + strand, within AO356_07770 at 1737.081 kb on - strand, within AO356_07770 at 1737.081 kb on - strand, within AO356_07770 at 1737.081 kb on - strand, within AO356_07770 at 1737.217 kb on + strand, within AO356_07770 at 1737.356 kb on + strand, within AO356_07770 at 1737.373 kb on + strand, within AO356_07770 at 1737.402 kb on + strand, within AO356_07770 at 1737.413 kb on + strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.414 kb on - strand, within AO356_07770 at 1737.443 kb on + strand, within AO356_07770 at 1737.443 kb on + strand, within AO356_07770 at 1737.443 kb on + strand, within AO356_07770 at 1737.461 kb on + strand, within AO356_07770 at 1737.461 kb on + strand, within AO356_07770 at 1737.461 kb on + strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.462 kb on - strand, within AO356_07770 at 1737.476 kb on - strand, within AO356_07770 at 1737.485 kb on + strand, within AO356_07770 at 1737.485 kb on + strand, within AO356_07770 at 1737.486 kb on - strand, within AO356_07770 at 1737.486 kb on - strand, within AO356_07770 at 1737.486 kb on - strand, within AO356_07770 at 1737.510 kb on - strand, within AO356_07770 at 1737.539 kb on - strand, within AO356_07770 at 1737.539 kb on - strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.564 kb on + strand, within AO356_07770 at 1737.565 kb on - strand, within AO356_07770 at 1737.620 kb on + strand, within AO356_07770 at 1737.620 kb on + strand, within AO356_07770 at 1737.620 kb on + strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.621 kb on - strand, within AO356_07770 at 1737.661 kb on + strand, within AO356_07770 at 1737.662 kb on - strand, within AO356_07770 at 1737.662 kb on - strand, within AO356_07770 at 1737.662 kb on - strand, within AO356_07770 at 1737.902 kb on + strand at 1737.902 kb on + strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.903 kb on - strand at 1737.922 kb on + strand at 1738.046 kb on + strand at 1738.047 kb on - strand at 1738.047 kb on - strand at 1738.267 kb on + strand, within AO356_07775 at 1738.268 kb on - strand, within AO356_07775 at 1738.268 kb on - strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.330 kb on + strand, within AO356_07775 at 1738.331 kb on - strand, within AO356_07775 at 1738.331 kb on - strand, within AO356_07775 at 1738.425 kb on + strand at 1738.468 kb on + strand at 1738.501 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.508 kb on + strand at 1738.509 kb on - strand at 1738.509 kb on - strand at 1738.509 kb on - strand at 1738.943 kb on + strand, within AO356_07780 at 1738.944 kb on - strand, within AO356_07780 at 1738.969 kb on + strand, within AO356_07780 at 1738.972 kb on + strand, within AO356_07780 at 1738.972 kb on + strand, within AO356_07780 at 1738.973 kb on - strand, within AO356_07780 at 1738.973 kb on - strand, within AO356_07780 at 1738.973 kb on - strand, within AO356_07780 at 1739.231 kb on + strand, within AO356_07780 at 1739.353 kb on + strand, within AO356_07780 at 1739.353 kb on + strand, within AO356_07780 at 1739.353 kb on + strand, within AO356_07780 at 1739.354 kb on - strand, within AO356_07780
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine remove 1,737,080 + AO356_07770 0.69 -0.0 1,737,080 + AO356_07770 0.69 -0.0 1,737,081 - AO356_07770 0.69 -0.1 1,737,081 - AO356_07770 0.69 +0.2 1,737,081 - AO356_07770 0.69 +0.3 1,737,217 + AO356_07770 0.73 -1.1 1,737,356 + AO356_07770 0.78 +0.3 1,737,373 + AO356_07770 0.79 -0.7 1,737,402 + AO356_07770 0.80 -0.2 1,737,413 + AO356_07770 0.80 +1.0 1,737,414 - AO356_07770 0.81 -0.2 1,737,414 - AO356_07770 0.81 -0.0 1,737,414 - AO356_07770 0.81 +0.1 1,737,414 - AO356_07770 0.81 -0.9 1,737,443 + AO356_07770 0.82 -2.0 1,737,443 + AO356_07770 0.82 +0.3 1,737,443 + AO356_07770 0.82 +0.8 1,737,461 + AO356_07770 0.82 +0.8 1,737,461 + AO356_07770 0.82 +2.3 1,737,461 + AO356_07770 0.82 -0.1 1,737,462 - AO356_07770 0.82 +0.8 1,737,462 - AO356_07770 0.82 +0.3 1,737,462 - AO356_07770 0.82 +0.5 1,737,462 - AO356_07770 0.82 +1.3 1,737,476 - AO356_07770 0.83 -0.4 1,737,485 + AO356_07770 0.83 -0.4 1,737,485 + AO356_07770 0.83 -0.6 1,737,486 - AO356_07770 0.83 -0.3 1,737,486 - AO356_07770 0.83 -1.5 1,737,486 - AO356_07770 0.83 -1.0 1,737,510 - AO356_07770 0.84 +0.1 1,737,539 - AO356_07770 0.85 +0.3 1,737,539 - AO356_07770 0.85 +0.7 1,737,564 + AO356_07770 0.86 -1.0 1,737,564 + AO356_07770 0.86 +0.5 1,737,564 + AO356_07770 0.86 -0.5 1,737,564 + AO356_07770 0.86 -0.2 1,737,564 + AO356_07770 0.86 +0.1 1,737,565 - AO356_07770 0.86 +0.7 1,737,620 + AO356_07770 0.88 -0.4 1,737,620 + AO356_07770 0.88 -0.4 1,737,620 + AO356_07770 0.88 +0.0 1,737,621 - AO356_07770 0.88 -1.5 1,737,621 - AO356_07770 0.88 -0.7 1,737,621 - AO356_07770 0.88 +0.4 1,737,621 - AO356_07770 0.88 +0.7 1,737,621 - AO356_07770 0.88 +0.3 1,737,661 + AO356_07770 0.89 +0.6 1,737,662 - AO356_07770 0.89 +0.0 1,737,662 - AO356_07770 0.89 -0.2 1,737,662 - AO356_07770 0.89 -0.5 1,737,902 + +0.1 1,737,902 + +0.8 1,737,903 - +0.0 1,737,903 - -0.7 1,737,903 - +0.3 1,737,903 - +1.4 1,737,903 - +0.1 1,737,903 - +0.2 1,737,922 + +0.7 1,738,046 + -0.7 1,738,047 - -0.7 1,738,047 - -0.0 1,738,267 + AO356_07775 0.65 +0.0 1,738,268 - AO356_07775 0.66 +0.9 1,738,268 - AO356_07775 0.66 +0.3 1,738,330 + AO356_07775 0.82 +0.6 1,738,330 + AO356_07775 0.82 +0.2 1,738,330 + AO356_07775 0.82 +0.1 1,738,330 + AO356_07775 0.82 +0.8 1,738,331 - AO356_07775 0.83 -0.1 1,738,331 - AO356_07775 0.83 +0.0 1,738,425 + -1.0 1,738,468 + -0.1 1,738,501 + -0.3 1,738,508 + -0.2 1,738,508 + +1.1 1,738,508 + +0.3 1,738,508 + +0.0 1,738,508 + +0.2 1,738,508 + +0.3 1,738,508 + -0.7 1,738,508 + +0.1 1,738,509 - -0.4 1,738,509 - +0.9 1,738,509 - +0.1 1,738,943 + AO356_07780 0.29 +0.6 1,738,944 - AO356_07780 0.29 -0.6 1,738,969 + AO356_07780 0.31 -1.0 1,738,972 + AO356_07780 0.31 -0.1 1,738,972 + AO356_07780 0.31 -1.7 1,738,973 - AO356_07780 0.31 +1.1 1,738,973 - AO356_07780 0.31 -0.2 1,738,973 - AO356_07780 0.31 -0.7 1,739,231 + AO356_07780 0.48 +0.9 1,739,353 + AO356_07780 0.57 +1.2 1,739,353 + AO356_07780 0.57 +1.1 1,739,353 + AO356_07780 0.57 +0.3 1,739,354 - AO356_07780 0.57 -0.1
Or see this region's nucleotide sequence