Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02570

Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02565 and AO356_02570 are separated by 124 nucleotidesAO356_02570 and AO356_02575 are separated by 19 nucleotides AO356_02565: AO356_02565 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 561,481 to 563,880 _02565 AO356_02570: AO356_02570 - molybdenum cofactor sulfurylase, at 564,005 to 564,847 _02570 AO356_02575: AO356_02575 - guanine deaminase, at 564,867 to 566,171 _02575 Position (kb) 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.170 kb on + strand, within AO356_02565at 563.170 kb on + strand, within AO356_02565at 563.170 kb on + strand, within AO356_02565at 563.171 kb on - strand, within AO356_02565at 563.171 kb on - strand, within AO356_02565at 563.171 kb on - strand, within AO356_02565at 563.171 kb on - strand, within AO356_02565at 563.263 kb on + strand, within AO356_02565at 563.263 kb on + strand, within AO356_02565at 563.263 kb on + strand, within AO356_02565at 563.264 kb on - strand, within AO356_02565at 563.264 kb on - strand, within AO356_02565at 563.299 kb on + strand, within AO356_02565at 563.300 kb on - strand, within AO356_02565at 563.300 kb on - strand, within AO356_02565at 563.321 kb on - strand, within AO356_02565at 563.321 kb on - strand, within AO356_02565at 563.321 kb on - strand, within AO356_02565at 563.321 kb on - strand, within AO356_02565at 563.321 kb on - strand, within AO356_02565at 563.353 kb on + strand, within AO356_02565at 563.353 kb on + strand, within AO356_02565at 563.353 kb on + strand, within AO356_02565at 563.354 kb on - strand, within AO356_02565at 563.354 kb on - strand, within AO356_02565at 563.354 kb on - strand, within AO356_02565at 563.356 kb on + strand, within AO356_02565at 563.356 kb on + strand, within AO356_02565at 563.356 kb on + strand, within AO356_02565at 563.356 kb on + strand, within AO356_02565at 563.356 kb on + strand, within AO356_02565at 563.356 kb on + strand, within AO356_02565at 563.357 kb on - strand, within AO356_02565at 563.357 kb on - strand, within AO356_02565at 563.359 kb on + strand, within AO356_02565at 563.359 kb on + strand, within AO356_02565at 563.359 kb on + strand, within AO356_02565at 563.359 kb on + strand, within AO356_02565at 563.359 kb on + strand, within AO356_02565at 563.359 kb on + strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.360 kb on - strand, within AO356_02565at 563.365 kb on + strand, within AO356_02565at 563.366 kb on - strand, within AO356_02565at 563.413 kb on + strand, within AO356_02565at 563.413 kb on + strand, within AO356_02565at 563.581 kb on + strand, within AO356_02565at 563.581 kb on + strand, within AO356_02565at 563.581 kb on + strand, within AO356_02565at 563.581 kb on + strand, within AO356_02565at 563.582 kb on - strand, within AO356_02565at 563.582 kb on - strand, within AO356_02565at 563.582 kb on - strand, within AO356_02565at 563.582 kb on - strand, within AO356_02565at 563.582 kb on - strand, within AO356_02565at 563.878 kb on + strandat 563.923 kb on + strandat 563.924 kb on - strandat 563.924 kb on - strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.005 kb on - strandat 564.005 kb on - strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.171 kb on - strand, within AO356_02570at 564.221 kb on - strand, within AO356_02570at 564.503 kb on + strand, within AO356_02570at 564.503 kb on + strand, within AO356_02570at 564.504 kb on - strand, within AO356_02570at 564.582 kb on - strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.761 kb on - strand, within AO356_02570at 564.761 kb on - strand, within AO356_02570at 564.948 kb on + strandat 564.948 kb on + strandat 564.949 kb on - strandat 564.949 kb on - strandat 564.954 kb on + strandat 564.954 kb on + strandat 564.955 kb on - strandat 565.014 kb on + strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.227 kb on - strand, within AO356_02575at 565.383 kb on + strand, within AO356_02575at 565.384 kb on - strand, within AO356_02575at 565.384 kb on - strand, within AO356_02575at 565.384 kb on - strand, within AO356_02575at 565.464 kb on + strand, within AO356_02575at 565.464 kb on + strand, within AO356_02575at 565.465 kb on - strand, within AO356_02575at 565.551 kb on + strand, within AO356_02575at 565.551 kb on + strand, within AO356_02575at 565.551 kb on + strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.819 kb on + strand, within AO356_02575at 565.819 kb on + strand, within AO356_02575at 565.819 kb on + strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
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563,170 + AO356_02565 0.70 -0.4
563,170 + AO356_02565 0.70 +0.3
563,170 + AO356_02565 0.70 +0.9
563,171 - AO356_02565 0.70 +0.3
563,171 - AO356_02565 0.70 -0.4
563,171 - AO356_02565 0.70 +1.1
563,171 - AO356_02565 0.70 -0.6
563,263 + AO356_02565 0.74 +0.6
563,263 + AO356_02565 0.74 -0.0
563,263 + AO356_02565 0.74 +1.0
563,264 - AO356_02565 0.74 -1.0
563,264 - AO356_02565 0.74 +0.6
563,299 + AO356_02565 0.76 +0.6
563,300 - AO356_02565 0.76 -0.4
563,300 - AO356_02565 0.76 -0.3
563,321 - AO356_02565 0.77 -0.9
563,321 - AO356_02565 0.77 -0.0
563,321 - AO356_02565 0.77 -0.2
563,321 - AO356_02565 0.77 -0.0
563,321 - AO356_02565 0.77 -0.4
563,353 + AO356_02565 0.78 -0.0
563,353 + AO356_02565 0.78 -0.4
563,353 + AO356_02565 0.78 -1.2
563,354 - AO356_02565 0.78 -0.0
563,354 - AO356_02565 0.78 -1.4
563,354 - AO356_02565 0.78 -0.1
563,356 + AO356_02565 0.78 +0.1
563,356 + AO356_02565 0.78 +0.6
563,356 + AO356_02565 0.78 -1.0
563,356 + AO356_02565 0.78 +0.6
563,356 + AO356_02565 0.78 -0.4
563,356 + AO356_02565 0.78 -0.0
563,357 - AO356_02565 0.78 +0.2
563,357 - AO356_02565 0.78 +0.3
563,359 + AO356_02565 0.78 -0.6
563,359 + AO356_02565 0.78 -0.1
563,359 + AO356_02565 0.78 -0.8
563,359 + AO356_02565 0.78 +1.0
563,359 + AO356_02565 0.78 -1.3
563,359 + AO356_02565 0.78 -0.7
563,360 - AO356_02565 0.78 +0.6
563,360 - AO356_02565 0.78 -0.3
563,360 - AO356_02565 0.78 -0.5
563,360 - AO356_02565 0.78 -0.0
563,360 - AO356_02565 0.78 +1.0
563,360 - AO356_02565 0.78 -0.0
563,360 - AO356_02565 0.78 -0.2
563,360 - AO356_02565 0.78 +0.1
563,365 + AO356_02565 0.79 -0.4
563,366 - AO356_02565 0.79 -0.7
563,413 + AO356_02565 0.81 -0.8
563,413 + AO356_02565 0.81 +0.1
563,581 + AO356_02565 0.88 -0.9
563,581 + AO356_02565 0.88 +0.5
563,581 + AO356_02565 0.88 +0.6
563,581 + AO356_02565 0.88 -0.5
563,582 - AO356_02565 0.88 -1.7
563,582 - AO356_02565 0.88 -1.0
563,582 - AO356_02565 0.88 -0.7
563,582 - AO356_02565 0.88 -0.2
563,582 - AO356_02565 0.88 -0.1
563,878 + -1.0
563,923 + +0.4
563,924 - +0.7
563,924 - +1.2
564,004 + -0.9
564,004 + +0.3
564,004 + -0.0
564,004 + -0.2
564,004 + -0.8
564,004 + -0.2
564,004 + -0.6
564,005 - -0.1
564,005 - +1.8
564,008 + -0.2
564,008 + +0.8
564,008 + -0.9
564,008 + -0.6
564,008 + +0.4
564,008 + +0.8
564,008 + +0.2
564,008 + -0.2
564,008 + -1.5
564,008 + -0.4
564,009 - -1.0
564,009 - +0.1
564,009 - -1.0
564,009 - +1.1
564,009 - -0.2
564,009 - -0.3
564,170 + AO356_02570 0.20 -1.0
564,170 + AO356_02570 0.20 -0.1
564,170 + AO356_02570 0.20 +1.0
564,170 + AO356_02570 0.20 -0.5
564,170 + AO356_02570 0.20 -0.0
564,170 + AO356_02570 0.20 -1.6
564,171 - AO356_02570 0.20 -0.6
564,221 - AO356_02570 0.26 +0.7
564,503 + AO356_02570 0.59 +0.3
564,503 + AO356_02570 0.59 -0.2
564,504 - AO356_02570 0.59 +0.1
564,582 - AO356_02570 0.68 -0.0
564,758 + AO356_02570 0.89 -0.5
564,758 + AO356_02570 0.89 +0.6
564,758 + AO356_02570 0.89 +0.3
564,758 + AO356_02570 0.89 -0.6
564,758 + AO356_02570 0.89 +0.9
564,758 + AO356_02570 0.89 -1.0
564,758 + AO356_02570 0.89 +1.1
564,759 - AO356_02570 0.89 -0.6
564,759 - AO356_02570 0.89 -0.0
564,759 - AO356_02570 0.89 +0.8
564,759 - AO356_02570 0.89 +0.2
564,761 - AO356_02570 0.90 -0.4
564,761 - AO356_02570 0.90 -0.3
564,948 + +0.7
564,948 + -0.3
564,949 - +0.7
564,949 - +0.2
564,954 + -0.0
564,954 + -0.5
564,955 - +0.1
565,014 + AO356_02575 0.11 -0.1
565,015 - AO356_02575 0.11 -0.7
565,015 - AO356_02575 0.11 +0.4
565,015 - AO356_02575 0.11 -0.6
565,015 - AO356_02575 0.11 +0.2
565,167 + AO356_02575 0.23 +0.4
565,167 + AO356_02575 0.23 -1.2
565,167 + AO356_02575 0.23 -1.1
565,167 + AO356_02575 0.23 -0.4
565,168 - AO356_02575 0.23 -0.4
565,168 - AO356_02575 0.23 +2.0
565,168 - AO356_02575 0.23 +0.1
565,168 - AO356_02575 0.23 +0.2
565,227 - AO356_02575 0.28 -0.2
565,383 + AO356_02575 0.40 -0.0
565,384 - AO356_02575 0.40 +0.8
565,384 - AO356_02575 0.40 +0.3
565,384 - AO356_02575 0.40 +1.3
565,464 + AO356_02575 0.46 -0.0
565,464 + AO356_02575 0.46 +0.3
565,465 - AO356_02575 0.46 -0.3
565,551 + AO356_02575 0.52 +1.0
565,551 + AO356_02575 0.52 +0.1
565,551 + AO356_02575 0.52 +0.2
565,552 - AO356_02575 0.52 +0.7
565,552 - AO356_02575 0.52 -0.0
565,552 - AO356_02575 0.52 -0.7
565,552 - AO356_02575 0.52 -0.0
565,552 - AO356_02575 0.52 -2.3
565,552 - AO356_02575 0.52 +0.4
565,552 - AO356_02575 0.52 +0.1
565,552 - AO356_02575 0.52 -0.0
565,552 - AO356_02575 0.52 -0.0
565,639 - AO356_02575 0.59 -1.0
565,639 - AO356_02575 0.59 -0.2
565,639 - AO356_02575 0.59 +0.2
565,639 - AO356_02575 0.59 -0.6
565,819 + AO356_02575 0.73 -0.4
565,819 + AO356_02575 0.73 -0.6
565,819 + AO356_02575 0.73 +0.8
565,820 - AO356_02575 0.73 -2.8
565,820 - AO356_02575 0.73 -0.5
565,820 - AO356_02575 0.73 -0.0
565,820 - AO356_02575 0.73 -0.2

Or see this region's nucleotide sequence