Experiment: 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01925 and AO356_01930 are separated by 15 nucleotides AO356_01930 and AO356_01935 overlap by 10 nucleotides
AO356_01925: AO356_01925 - hypothetical protein, at 427,543 to 427,905
_01925
AO356_01930: AO356_01930 - hypothetical protein, at 427,921 to 428,799
_01930
AO356_01935: AO356_01935 - biotin synthase, at 428,790 to 430,010
_01935
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 426.934 kb on + strand at 426.939 kb on + strand at 426.939 kb on + strand at 426.955 kb on + strand at 426.955 kb on + strand at 427.013 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.029 kb on + strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.030 kb on - strand at 427.159 kb on + strand at 427.159 kb on + strand at 427.159 kb on + strand at 427.183 kb on + strand at 427.184 kb on - strand at 427.245 kb on - strand at 427.251 kb on - strand at 427.286 kb on + strand at 427.286 kb on + strand at 427.286 kb on + strand at 427.286 kb on + strand at 427.287 kb on - strand at 427.287 kb on - strand at 427.309 kb on + strand at 427.414 kb on - strand at 427.442 kb on + strand at 427.442 kb on + strand at 427.443 kb on - strand at 427.443 kb on - strand at 427.443 kb on - strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.456 kb on + strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.457 kb on - strand at 427.462 kb on + strand at 427.463 kb on - strand at 427.463 kb on - strand at 427.488 kb on + strand at 427.502 kb on + strand at 427.502 kb on + strand at 427.520 kb on + strand at 427.556 kb on - strand at 427.674 kb on + strand, within AO356_01925 at 427.703 kb on + strand, within AO356_01925 at 427.721 kb on + strand, within AO356_01925 at 427.721 kb on + strand, within AO356_01925 at 427.777 kb on - strand, within AO356_01925 at 427.783 kb on + strand, within AO356_01925 at 427.783 kb on + strand, within AO356_01925 at 427.783 kb on + strand, within AO356_01925 at 427.783 kb on + strand, within AO356_01925 at 427.795 kb on - strand, within AO356_01925 at 427.901 kb on + strand at 427.902 kb on - strand at 427.922 kb on + strand at 427.922 kb on + strand at 427.922 kb on + strand at 427.922 kb on + strand at 427.946 kb on - strand at 427.975 kb on - strand at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.156 kb on + strand, within AO356_01930 at 428.159 kb on + strand, within AO356_01930 at 428.160 kb on - strand, within AO356_01930 at 428.160 kb on - strand, within AO356_01930 at 428.160 kb on - strand, within AO356_01930 at 428.160 kb on - strand, within AO356_01930 at 428.160 kb on - strand, within AO356_01930 at 428.549 kb on + strand, within AO356_01930 at 428.549 kb on + strand, within AO356_01930 at 428.549 kb on + strand, within AO356_01930 at 428.550 kb on - strand, within AO356_01930 at 428.550 kb on - strand, within AO356_01930 at 428.550 kb on - strand, within AO356_01930 at 428.947 kb on + strand, within AO356_01935 at 428.993 kb on + strand, within AO356_01935 at 428.994 kb on - strand, within AO356_01935 at 429.014 kb on + strand, within AO356_01935 at 429.149 kb on - strand, within AO356_01935 at 429.182 kb on - strand, within AO356_01935 at 429.262 kb on + strand, within AO356_01935 at 429.262 kb on + strand, within AO356_01935 at 429.265 kb on + strand, within AO356_01935 at 429.265 kb on + strand, within AO356_01935 at 429.265 kb on + strand, within AO356_01935 at 429.266 kb on - strand, within AO356_01935 at 429.266 kb on - strand, within AO356_01935 at 429.322 kb on + strand, within AO356_01935 at 429.556 kb on - strand, within AO356_01935 at 429.590 kb on + strand, within AO356_01935 at 429.592 kb on + strand, within AO356_01935 at 429.592 kb on + strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.593 kb on - strand, within AO356_01935 at 429.637 kb on - strand, within AO356_01935 at 429.656 kb on - strand, within AO356_01935 at 429.656 kb on - strand, within AO356_01935 at 429.796 kb on + strand, within AO356_01935 at 429.796 kb on + strand, within AO356_01935 at 429.796 kb on + strand, within AO356_01935
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine remove 426,934 + -0.6 426,939 + +0.1 426,939 + +0.6 426,955 + -0.6 426,955 + -1.3 427,013 + +0.4 427,029 + -0.1 427,029 + -0.6 427,029 + -0.2 427,029 + +0.5 427,029 + -0.5 427,030 - -0.1 427,030 - -0.3 427,030 - -0.4 427,030 - +0.7 427,030 - -0.1 427,030 - -0.5 427,030 - +0.2 427,030 - +0.2 427,159 + +0.8 427,159 + +0.9 427,159 + -1.1 427,183 + +1.2 427,184 - +0.4 427,245 - -0.1 427,251 - -0.1 427,286 + -0.3 427,286 + +0.9 427,286 + -0.8 427,286 + -0.6 427,287 - +1.3 427,287 - +0.9 427,309 + -0.9 427,414 - -1.5 427,442 + +0.4 427,442 + +0.4 427,443 - +1.0 427,443 - -1.1 427,443 - +0.9 427,456 + -0.6 427,456 + -0.2 427,456 + -1.5 427,456 + +0.4 427,456 + -1.5 427,456 + -0.5 427,456 + -0.2 427,456 + +0.9 427,456 + -0.2 427,456 + +0.6 427,456 + +0.1 427,457 - -0.1 427,457 - +0.9 427,457 - +0.2 427,457 - +0.4 427,457 - -1.6 427,457 - +2.5 427,457 - +0.1 427,457 - -0.3 427,457 - +0.5 427,462 + -2.4 427,463 - -0.6 427,463 - +0.6 427,488 + +0.4 427,502 + -0.3 427,502 + +0.5 427,520 + -0.2 427,556 - -0.3 427,674 + AO356_01925 0.36 -0.4 427,703 + AO356_01925 0.44 -0.4 427,721 + AO356_01925 0.49 +0.6 427,721 + AO356_01925 0.49 +0.3 427,777 - AO356_01925 0.64 -0.7 427,783 + AO356_01925 0.66 +0.6 427,783 + AO356_01925 0.66 +0.1 427,783 + AO356_01925 0.66 +0.2 427,783 + AO356_01925 0.66 -0.5 427,795 - AO356_01925 0.69 -0.7 427,901 + +0.4 427,902 - +0.9 427,922 + +0.9 427,922 + +0.8 427,922 + +0.3 427,922 + -0.3 427,946 - -0.1 427,975 - -0.2 428,156 + AO356_01930 0.27 +0.6 428,156 + AO356_01930 0.27 +0.2 428,156 + AO356_01930 0.27 +0.9 428,156 + AO356_01930 0.27 -0.1 428,156 + AO356_01930 0.27 +0.5 428,156 + AO356_01930 0.27 +0.5 428,156 + AO356_01930 0.27 +0.5 428,156 + AO356_01930 0.27 -0.6 428,159 + AO356_01930 0.27 +0.9 428,160 - AO356_01930 0.27 -0.2 428,160 - AO356_01930 0.27 +0.1 428,160 - AO356_01930 0.27 -0.5 428,160 - AO356_01930 0.27 +0.4 428,160 - AO356_01930 0.27 +1.7 428,549 + AO356_01930 0.71 +0.1 428,549 + AO356_01930 0.71 +0.5 428,549 + AO356_01930 0.71 +0.1 428,550 - AO356_01930 0.72 -0.4 428,550 - AO356_01930 0.72 +1.4 428,550 - AO356_01930 0.72 +0.1 428,947 + AO356_01935 0.13 +0.1 428,993 + AO356_01935 0.17 +0.5 428,994 - AO356_01935 0.17 +0.7 429,014 + AO356_01935 0.18 -1.4 429,149 - AO356_01935 0.29 +0.3 429,182 - AO356_01935 0.32 -0.4 429,262 + AO356_01935 0.39 -0.1 429,262 + AO356_01935 0.39 +1.5 429,265 + AO356_01935 0.39 -0.3 429,265 + AO356_01935 0.39 -0.2 429,265 + AO356_01935 0.39 +0.4 429,266 - AO356_01935 0.39 +0.4 429,266 - AO356_01935 0.39 +1.1 429,322 + AO356_01935 0.44 -0.1 429,556 - AO356_01935 0.63 -0.6 429,590 + AO356_01935 0.66 -2.1 429,592 + AO356_01935 0.66 +0.6 429,592 + AO356_01935 0.66 +2.8 429,593 - AO356_01935 0.66 -0.8 429,593 - AO356_01935 0.66 -1.4 429,593 - AO356_01935 0.66 -0.4 429,593 - AO356_01935 0.66 -0.5 429,593 - AO356_01935 0.66 -0.5 429,593 - AO356_01935 0.66 -0.6 429,593 - AO356_01935 0.66 -0.9 429,637 - AO356_01935 0.69 -0.7 429,656 - AO356_01935 0.71 -0.1 429,656 - AO356_01935 0.71 +0.3 429,796 + AO356_01935 0.82 -0.5 429,796 + AO356_01935 0.82 +0.1 429,796 + AO356_01935 0.82 -1.6
Or see this region's nucleotide sequence