Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1205.1

Experiment: D-Fructose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1204.1 and Xcc-8004.1205.1 are separated by 18 nucleotidesXcc-8004.1205.1 and Xcc-8004.1206.1 are separated by 138 nucleotides Xcc-8004.1204.1: Xcc-8004.1204.1 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 1,136,662 to 1,138,803 Xcc-8004.1204.1 Xcc-8004.1205.1: Xcc-8004.1205.1 - hypothetical protein, at 1,138,822 to 1,139,202 Xcc-8004.1205.1 Xcc-8004.1206.1: Xcc-8004.1206.1 - D-galactarate dehydratase (EC 4.2.1.42), at 1,139,341 to 1,140,885 Xcc-8004.1206.1 Position (kb) 1138 1139 1140Strain fitness (log2 ratio) -2 -1 0 1 2at 1137.991 kb on + strand, within Xcc-8004.1204.1at 1137.991 kb on + strand, within Xcc-8004.1204.1at 1138.650 kb on - strandat 1138.650 kb on - strandat 1138.919 kb on + strand, within Xcc-8004.1205.1at 1138.920 kb on - strand, within Xcc-8004.1205.1at 1138.971 kb on - strand, within Xcc-8004.1205.1at 1138.971 kb on - strand, within Xcc-8004.1205.1at 1138.985 kb on - strand, within Xcc-8004.1205.1at 1139.121 kb on - strand, within Xcc-8004.1205.1at 1139.153 kb on + strand, within Xcc-8004.1205.1at 1139.185 kb on - strandat 1139.295 kb on - strandat 1139.381 kb on + strandat 1139.381 kb on + strandat 1139.381 kb on + strandat 1139.381 kb on + strandat 1139.382 kb on - strandat 1139.423 kb on - strandat 1139.433 kb on - strandat 1139.502 kb on + strand, within Xcc-8004.1206.1at 1139.676 kb on - strand, within Xcc-8004.1206.1at 1139.775 kb on + strand, within Xcc-8004.1206.1at 1140.185 kb on + strand, within Xcc-8004.1206.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose 16.67 mM (C)
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1,137,991 + Xcc-8004.1204.1 0.62 -0.7
1,137,991 + Xcc-8004.1204.1 0.62 -1.5
1,138,650 - -0.2
1,138,650 - +0.3
1,138,919 + Xcc-8004.1205.1 0.25 -1.8
1,138,920 - Xcc-8004.1205.1 0.26 -2.0
1,138,971 - Xcc-8004.1205.1 0.39 -1.7
1,138,971 - Xcc-8004.1205.1 0.39 +0.7
1,138,985 - Xcc-8004.1205.1 0.43 -1.2
1,139,121 - Xcc-8004.1205.1 0.78 +0.1
1,139,153 + Xcc-8004.1205.1 0.87 -1.8
1,139,185 - -2.2
1,139,295 - -0.8
1,139,381 + -1.4
1,139,381 + -0.0
1,139,381 + +1.8
1,139,381 + -0.9
1,139,382 - +0.7
1,139,423 - -0.6
1,139,433 - -0.7
1,139,502 + Xcc-8004.1206.1 0.10 -1.6
1,139,676 - Xcc-8004.1206.1 0.22 +0.7
1,139,775 + Xcc-8004.1206.1 0.28 +0.3
1,140,185 + Xcc-8004.1206.1 0.55 -0.0

Or see this region's nucleotide sequence