Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3572

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3570 and Pf6N2E2_3571 overlap by 4 nucleotidesPf6N2E2_3571 and Pf6N2E2_3572 are separated by 9 nucleotidesPf6N2E2_3572 and Pf6N2E2_3573 are separated by 31 nucleotidesPf6N2E2_3573 and Pf6N2E2_3574 are separated by 184 nucleotides Pf6N2E2_3570 - Urease accessory protein UreE, at 4,161,619 to 4,162,119 _3570 Pf6N2E2_3571 - Urease accessory protein UreF, at 4,162,116 to 4,162,790 _3571 Pf6N2E2_3572 - Urease accessory protein UreG, at 4,162,800 to 4,163,414 _3572 Pf6N2E2_3573 - HupE-UreJ family metal transporter, at 4,163,446 to 4,164,018 _3573 Pf6N2E2_3574 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 4,164,203 to 4,165,336 _3574 Position (kb) 4162 4163 4164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 4161.886 kb on + strand, within Pf6N2E2_3570at 4161.952 kb on + strand, within Pf6N2E2_3570at 4161.952 kb on + strand, within Pf6N2E2_3570at 4161.952 kb on + strand, within Pf6N2E2_3570at 4161.953 kb on - strand, within Pf6N2E2_3570at 4161.953 kb on - strand, within Pf6N2E2_3570at 4161.953 kb on - strand, within Pf6N2E2_3570at 4161.953 kb on - strand, within Pf6N2E2_3570at 4161.953 kb on - strand, within Pf6N2E2_3570at 4162.033 kb on + strand, within Pf6N2E2_3570at 4162.033 kb on + strand, within Pf6N2E2_3570at 4162.081 kb on + strandat 4162.081 kb on + strandat 4162.081 kb on + strandat 4162.082 kb on - strandat 4162.082 kb on - strandat 4162.173 kb on + strandat 4162.179 kb on + strandat 4162.179 kb on + strandat 4162.179 kb on + strandat 4162.179 kb on + strandat 4162.179 kb on + strandat 4162.179 kb on + strandat 4162.180 kb on - strandat 4162.180 kb on - strandat 4162.180 kb on - strandat 4162.180 kb on - strandat 4162.180 kb on - strandat 4162.180 kb on - strandat 4162.180 kb on - strandat 4162.392 kb on + strand, within Pf6N2E2_3571at 4162.540 kb on + strand, within Pf6N2E2_3571at 4162.540 kb on + strand, within Pf6N2E2_3571at 4162.541 kb on - strand, within Pf6N2E2_3571at 4162.541 kb on - strand, within Pf6N2E2_3571at 4162.767 kb on + strandat 4162.767 kb on + strandat 4162.767 kb on + strandat 4162.788 kb on + strandat 4162.789 kb on - strandat 4162.805 kb on + strandat 4162.805 kb on + strandat 4162.805 kb on + strandat 4162.805 kb on + strandat 4162.806 kb on - strandat 4162.806 kb on - strandat 4162.806 kb on - strandat 4162.806 kb on - strandat 4162.840 kb on + strandat 4162.840 kb on + strandat 4162.841 kb on - strandat 4162.885 kb on + strand, within Pf6N2E2_3572at 4162.886 kb on - strand, within Pf6N2E2_3572at 4162.897 kb on - strand, within Pf6N2E2_3572at 4162.897 kb on - strandat 4162.897 kb on - strand, within Pf6N2E2_3572at 4162.926 kb on + strand, within Pf6N2E2_3572at 4162.926 kb on + strand, within Pf6N2E2_3572at 4162.926 kb on + strand, within Pf6N2E2_3572at 4162.926 kb on + strand, within Pf6N2E2_3572at 4162.926 kb on + strand, within Pf6N2E2_3572at 4162.926 kb on + strand, within Pf6N2E2_3572at 4162.927 kb on - strand, within Pf6N2E2_3572at 4162.927 kb on - strand, within Pf6N2E2_3572at 4162.927 kb on - strand, within Pf6N2E2_3572at 4162.927 kb on - strand, within Pf6N2E2_3572at 4162.927 kb on - strand, within Pf6N2E2_3572at 4162.927 kb on - strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.163 kb on + strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.164 kb on - strand, within Pf6N2E2_3572at 4163.246 kb on + strand, within Pf6N2E2_3572at 4163.247 kb on - strand, within Pf6N2E2_3572at 4163.333 kb on - strand, within Pf6N2E2_3572at 4163.441 kb on + strandat 4163.658 kb on + strand, within Pf6N2E2_3573at 4163.659 kb on - strand, within Pf6N2E2_3573at 4163.659 kb on - strand, within Pf6N2E2_3573at 4163.659 kb on - strand, within Pf6N2E2_3573at 4163.872 kb on + strand, within Pf6N2E2_3573at 4164.089 kb on + strandat 4164.089 kb on + strandat 4164.089 kb on + strandat 4164.090 kb on - strandat 4164.090 kb on - strandat 4164.090 kb on - strandat 4164.090 kb on - strandat 4164.160 kb on + strandat 4164.161 kb on - strandat 4164.161 kb on - strandat 4164.161 kb on - strandat 4164.161 kb on - strandat 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.410 kb on + strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574at 4164.411 kb on - strand, within Pf6N2E2_3574

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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4,161,886 + Pf6N2E2_3570 0.53 -4.0
4,161,952 + Pf6N2E2_3570 0.66 -2.5
4,161,952 + Pf6N2E2_3570 0.66 -3.8
4,161,952 + Pf6N2E2_3570 0.66 -0.2
4,161,953 - Pf6N2E2_3570 0.67 -2.0
4,161,953 - Pf6N2E2_3570 0.67 -2.6
4,161,953 - Pf6N2E2_3570 0.67 -2.4
4,161,953 - Pf6N2E2_3570 0.67 -3.4
4,161,953 - Pf6N2E2_3570 0.67 -1.2
4,162,033 + Pf6N2E2_3570 0.83 -3.8
4,162,033 + Pf6N2E2_3570 0.83 +1.4
4,162,081 + -0.1
4,162,081 + -1.6
4,162,081 + +2.3
4,162,082 - -3.9
4,162,082 - -2.7
4,162,173 + -3.9
4,162,179 + -4.0
4,162,179 + -1.5
4,162,179 + -3.4
4,162,179 + -2.9
4,162,179 + -3.4
4,162,179 + -1.9
4,162,180 - -4.2
4,162,180 - -3.5
4,162,180 - -2.4
4,162,180 - -3.7
4,162,180 - -4.3
4,162,180 - -3.9
4,162,180 - -3.3
4,162,392 + Pf6N2E2_3571 0.41 -2.5
4,162,540 + Pf6N2E2_3571 0.63 -4.4
4,162,540 + Pf6N2E2_3571 0.63 -2.7
4,162,541 - Pf6N2E2_3571 0.63 -3.2
4,162,541 - Pf6N2E2_3571 0.63 -3.7
4,162,767 + -2.1
4,162,767 + +0.4
4,162,767 + -2.7
4,162,788 + +8.8
4,162,789 - -3.5
4,162,805 + -3.2
4,162,805 + -2.2
4,162,805 + -2.0
4,162,805 + -1.3
4,162,806 - -3.3
4,162,806 - -4.1
4,162,806 - -1.9
4,162,806 - -4.0
4,162,840 + -3.3
4,162,840 + -2.5
4,162,841 - -3.7
4,162,885 + Pf6N2E2_3572 0.14 -2.4
4,162,886 - Pf6N2E2_3572 0.14 -3.9
4,162,897 - Pf6N2E2_3572 0.16 -2.0
4,162,897 - +1.4
4,162,897 - Pf6N2E2_3572 0.16 -4.1
4,162,926 + Pf6N2E2_3572 0.20 -3.1
4,162,926 + Pf6N2E2_3572 0.20 -3.9
4,162,926 + Pf6N2E2_3572 0.20 -4.0
4,162,926 + Pf6N2E2_3572 0.20 -2.8
4,162,926 + Pf6N2E2_3572 0.20 -2.6
4,162,926 + Pf6N2E2_3572 0.20 -3.5
4,162,927 - Pf6N2E2_3572 0.21 -4.3
4,162,927 - Pf6N2E2_3572 0.21 -3.1
4,162,927 - Pf6N2E2_3572 0.21 -1.2
4,162,927 - Pf6N2E2_3572 0.21 -2.0
4,162,927 - Pf6N2E2_3572 0.21 -3.5
4,162,927 - Pf6N2E2_3572 0.21 -1.6
4,163,163 + Pf6N2E2_3572 0.59 -2.5
4,163,163 + Pf6N2E2_3572 0.59 -4.1
4,163,163 + Pf6N2E2_3572 0.59 -2.7
4,163,163 + Pf6N2E2_3572 0.59 -2.9
4,163,163 + Pf6N2E2_3572 0.59 -3.3
4,163,163 + Pf6N2E2_3572 0.59 -3.5
4,163,163 + Pf6N2E2_3572 0.59 -3.0
4,163,164 - Pf6N2E2_3572 0.59 -3.6
4,163,164 - Pf6N2E2_3572 0.59 -1.1
4,163,164 - Pf6N2E2_3572 0.59 -2.4
4,163,164 - Pf6N2E2_3572 0.59 -3.4
4,163,164 - Pf6N2E2_3572 0.59 -2.7
4,163,164 - Pf6N2E2_3572 0.59 -2.1
4,163,164 - Pf6N2E2_3572 0.59 -1.4
4,163,164 - Pf6N2E2_3572 0.59 -3.9
4,163,164 - Pf6N2E2_3572 0.59 -2.5
4,163,164 - Pf6N2E2_3572 0.59 -2.2
4,163,164 - Pf6N2E2_3572 0.59 -2.5
4,163,164 - Pf6N2E2_3572 0.59 -1.4
4,163,164 - Pf6N2E2_3572 0.59 -1.1
4,163,164 - Pf6N2E2_3572 0.59 -2.8
4,163,164 - Pf6N2E2_3572 0.59 -1.9
4,163,164 - Pf6N2E2_3572 0.59 -2.4
4,163,164 - Pf6N2E2_3572 0.59 -1.2
4,163,164 - Pf6N2E2_3572 0.59 -1.8
4,163,246 + Pf6N2E2_3572 0.73 -1.7
4,163,247 - Pf6N2E2_3572 0.73 -3.7
4,163,333 - Pf6N2E2_3572 0.87 -2.0
4,163,441 + -4.4
4,163,658 + Pf6N2E2_3573 0.37 -2.9
4,163,659 - Pf6N2E2_3573 0.37 -4.3
4,163,659 - Pf6N2E2_3573 0.37 -3.8
4,163,659 - Pf6N2E2_3573 0.37 -2.5
4,163,872 + Pf6N2E2_3573 0.74 -4.3
4,164,089 + -0.0
4,164,089 + -1.4
4,164,089 + -0.2
4,164,090 - -1.5
4,164,090 - -2.3
4,164,090 - -2.0
4,164,090 - -2.2
4,164,160 + +0.4
4,164,161 - -2.9
4,164,161 - -1.8
4,164,161 - -0.2
4,164,161 - -0.4
4,164,410 + Pf6N2E2_3574 0.18 +0.8
4,164,410 + Pf6N2E2_3574 0.18 -0.0
4,164,410 + Pf6N2E2_3574 0.18 +0.3
4,164,410 + Pf6N2E2_3574 0.18 +0.0
4,164,410 + Pf6N2E2_3574 0.18 -0.1
4,164,410 + Pf6N2E2_3574 0.18 +2.2
4,164,410 + Pf6N2E2_3574 0.18 -0.1
4,164,410 + Pf6N2E2_3574 0.18 -0.1
4,164,410 + Pf6N2E2_3574 0.18 +0.3
4,164,410 + Pf6N2E2_3574 0.18 -1.1
4,164,410 + Pf6N2E2_3574 0.18 -0.0
4,164,410 + Pf6N2E2_3574 0.18 +1.1
4,164,410 + Pf6N2E2_3574 0.18 +0.7
4,164,410 + Pf6N2E2_3574 0.18 +0.3
4,164,410 + Pf6N2E2_3574 0.18 +1.3
4,164,410 + Pf6N2E2_3574 0.18 +0.3
4,164,410 + Pf6N2E2_3574 0.18 +1.1
4,164,410 + Pf6N2E2_3574 0.18 -0.1
4,164,410 + Pf6N2E2_3574 0.18 +0.5
4,164,411 - Pf6N2E2_3574 0.18 -0.2
4,164,411 - Pf6N2E2_3574 0.18 -0.9
4,164,411 - Pf6N2E2_3574 0.18 -2.6
4,164,411 - Pf6N2E2_3574 0.18 -1.2
4,164,411 - Pf6N2E2_3574 0.18 -0.3
4,164,411 - Pf6N2E2_3574 0.18 -1.0
4,164,411 - Pf6N2E2_3574 0.18 -0.4
4,164,411 - Pf6N2E2_3574 0.18 -0.9
4,164,411 - Pf6N2E2_3574 0.18 -1.5
4,164,411 - Pf6N2E2_3574 0.18 -0.9
4,164,411 - Pf6N2E2_3574 0.18 -1.4
4,164,411 - Pf6N2E2_3574 0.18 +0.3
4,164,411 - Pf6N2E2_3574 0.18 -2.2
4,164,411 - Pf6N2E2_3574 0.18 -1.1
4,164,411 - Pf6N2E2_3574 0.18 -0.4
4,164,411 - Pf6N2E2_3574 0.18 -1.0
4,164,411 - Pf6N2E2_3574 0.18 -0.2
4,164,411 - Pf6N2E2_3574 0.18 -2.4

Or see this region's nucleotide sequence