Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06135

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06133 and H281DRAFT_06134 are separated by 462 nucleotidesH281DRAFT_06134 and H281DRAFT_06135 overlap by 180 nucleotides H281DRAFT_06133: H281DRAFT_06133 - hypothetical protein, at 21,916 to 23,049 _06133 H281DRAFT_06134: H281DRAFT_06134 - hypothetical protein, at 23,512 to 24,057 _06134 H281DRAFT_06135: H281DRAFT_06135 - hypothetical protein, at 23,878 to 24,783 _06135 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1 2 3at 22.937 kb on - strandat 22.937 kb on - strandat 22.966 kb on + strandat 23.047 kb on + strandat 23.083 kb on + strandat 23.113 kb on + strandat 23.113 kb on + strandat 23.114 kb on - strandat 23.315 kb on + strandat 23.316 kb on - strandat 23.497 kb on + strandat 23.497 kb on + strandat 23.619 kb on + strand, within H281DRAFT_06134at 23.699 kb on - strandat 23.699 kb on - strand, within H281DRAFT_06134at 23.879 kb on + strandat 24.492 kb on - strand, within H281DRAFT_06135at 24.751 kb on - strandat 24.846 kb on + strandat 24.846 kb on + strandat 24.846 kb on + strandat 24.846 kb on + strandat 24.847 kb on - strandat 24.849 kb on - strandat 24.913 kb on - strandat 24.935 kb on - strandat 24.998 kb on + strandat 24.998 kb on + strandat 24.999 kb on - strandat 25.078 kb on + strandat 25.079 kb on - strandat 25.107 kb on - strandat 25.125 kb on - strandat 25.125 kb on - strandat 25.125 kb on - strandat 25.125 kb on - strandat 25.150 kb on + strandat 25.210 kb on + strandat 25.210 kb on + strandat 25.213 kb on + strandat 25.213 kb on + strandat 25.214 kb on - strandat 25.214 kb on - strandat 25.222 kb on - strandat 25.319 kb on + strandat 25.320 kb on - strandat 25.331 kb on - strandat 25.463 kb on + strandat 25.463 kb on + strandat 25.534 kb on + strandat 25.534 kb on + strandat 25.571 kb on - strandat 25.625 kb on - strandat 25.742 kb on + strandat 25.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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22,937 - -0.1
22,937 - -0.5
22,966 + -0.5
23,047 + +1.0
23,083 + +0.0
23,113 + +0.0
23,113 + +0.0
23,114 - +0.3
23,315 + -0.5
23,316 - -0.7
23,497 + -0.1
23,497 + +0.3
23,619 + H281DRAFT_06134 0.20 -0.1
23,699 - +3.1
23,699 - H281DRAFT_06134 0.34 +1.4
23,879 + +0.2
24,492 - H281DRAFT_06135 0.68 +0.7
24,751 - +0.2
24,846 + -0.5
24,846 + -0.9
24,846 + -0.2
24,846 + +0.0
24,847 - +2.8
24,849 - +0.3
24,913 - +0.4
24,935 - +0.6
24,998 + +1.4
24,998 + +0.1
24,999 - +0.1
25,078 + +0.3
25,079 - +0.1
25,107 - +0.1
25,125 - -0.0
25,125 - -0.1
25,125 - +0.3
25,125 - -1.0
25,150 + -0.3
25,210 + -1.2
25,210 + +0.4
25,213 + +0.4
25,213 + -0.5
25,214 - +1.1
25,214 - -0.2
25,222 - -0.8
25,319 + +0.3
25,320 - +0.1
25,331 - +0.4
25,463 + +0.5
25,463 + -0.1
25,534 + +0.1
25,534 + -0.2
25,571 - +0.4
25,625 - +0.6
25,742 + +0.6
25,743 - +0.0

Or see this region's nucleotide sequence