Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05623

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05622 and H281DRAFT_05623 are separated by 43 nucleotidesH281DRAFT_05623 and H281DRAFT_05624 are separated by 349 nucleotides H281DRAFT_05622: H281DRAFT_05622 - D-amino-acid dehydrogenase, at 47,688 to 49,016 _05622 H281DRAFT_05623: H281DRAFT_05623 - Predicted arabinose efflux permease, MFS family, at 49,060 to 50,319 _05623 H281DRAFT_05624: H281DRAFT_05624 - protein-tyrosine phosphatase, at 50,669 to 51,613 _05624 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2 3at 48.118 kb on + strand, within H281DRAFT_05622at 48.146 kb on + strand, within H281DRAFT_05622at 48.392 kb on + strand, within H281DRAFT_05622at 48.392 kb on + strand, within H281DRAFT_05622at 48.393 kb on - strand, within H281DRAFT_05622at 48.393 kb on - strand, within H281DRAFT_05622at 48.398 kb on + strand, within H281DRAFT_05622at 48.400 kb on - strand, within H281DRAFT_05622at 48.610 kb on + strand, within H281DRAFT_05622at 48.611 kb on - strand, within H281DRAFT_05622at 48.629 kb on - strand, within H281DRAFT_05622at 48.629 kb on - strand, within H281DRAFT_05622at 48.676 kb on + strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.677 kb on - strand, within H281DRAFT_05622at 48.680 kb on - strand, within H281DRAFT_05622at 48.779 kb on + strand, within H281DRAFT_05622at 48.817 kb on + strand, within H281DRAFT_05622at 48.817 kb on + strand, within H281DRAFT_05622at 48.965 kb on - strandat 49.023 kb on - strandat 49.023 kb on - strandat 49.285 kb on + strand, within H281DRAFT_05623at 49.285 kb on + strand, within H281DRAFT_05623at 49.285 kb on + strand, within H281DRAFT_05623at 49.285 kb on + strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.286 kb on - strand, within H281DRAFT_05623at 49.298 kb on + strand, within H281DRAFT_05623at 49.299 kb on - strand, within H281DRAFT_05623at 49.299 kb on - strand, within H281DRAFT_05623at 49.391 kb on + strand, within H281DRAFT_05623at 49.479 kb on + strand, within H281DRAFT_05623at 49.480 kb on - strand, within H281DRAFT_05623at 49.482 kb on - strand, within H281DRAFT_05623at 49.482 kb on - strand, within H281DRAFT_05623at 49.518 kb on - strand, within H281DRAFT_05623at 49.563 kb on - strand, within H281DRAFT_05623at 49.718 kb on + strand, within H281DRAFT_05623at 49.718 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.751 kb on + strand, within H281DRAFT_05623at 49.752 kb on - strand, within H281DRAFT_05623at 49.805 kb on + strand, within H281DRAFT_05623at 49.805 kb on + strand, within H281DRAFT_05623at 49.805 kb on + strand, within H281DRAFT_05623at 49.806 kb on - strand, within H281DRAFT_05623at 49.839 kb on - strand, within H281DRAFT_05623at 50.216 kb on + strandat 50.264 kb on + strandat 50.374 kb on + strandat 50.374 kb on + strandat 50.375 kb on - strandat 50.508 kb on + strandat 50.509 kb on - strandat 50.556 kb on + strandat 50.556 kb on + strandat 50.557 kb on - strandat 50.563 kb on + strandat 50.564 kb on - strandat 50.564 kb on - strandat 50.564 kb on - strandat 50.564 kb on - strandat 50.564 kb on - strandat 50.564 kb on - strandat 50.566 kb on + strandat 50.566 kb on + strandat 50.586 kb on - strandat 50.598 kb on + strandat 50.599 kb on - strandat 50.599 kb on - strandat 50.599 kb on - strandat 50.599 kb on - strandat 50.667 kb on + strandat 51.079 kb on + strand, within H281DRAFT_05624at 51.080 kb on - strand, within H281DRAFT_05624at 51.099 kb on + strand, within H281DRAFT_05624at 51.117 kb on + strand, within H281DRAFT_05624at 51.117 kb on + strand, within H281DRAFT_05624at 51.118 kb on - strand, within H281DRAFT_05624at 51.200 kb on + strand, within H281DRAFT_05624at 51.200 kb on + strand, within H281DRAFT_05624at 51.201 kb on - strand, within H281DRAFT_05624at 51.201 kb on - strand, within H281DRAFT_05624at 51.204 kb on + strand, within H281DRAFT_05624at 51.205 kb on - strand, within H281DRAFT_05624at 51.230 kb on + strand, within H281DRAFT_05624at 51.244 kb on - strand, within H281DRAFT_05624

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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48,118 + H281DRAFT_05622 0.32 -0.5
48,146 + H281DRAFT_05622 0.34 +1.0
48,392 + H281DRAFT_05622 0.53 -0.4
48,392 + H281DRAFT_05622 0.53 -0.5
48,393 - H281DRAFT_05622 0.53 +0.0
48,393 - H281DRAFT_05622 0.53 -0.4
48,398 + H281DRAFT_05622 0.53 -0.1
48,400 - H281DRAFT_05622 0.54 +0.2
48,610 + H281DRAFT_05622 0.69 +0.8
48,611 - H281DRAFT_05622 0.69 +3.2
48,629 - H281DRAFT_05622 0.71 -1.5
48,629 - H281DRAFT_05622 0.71 -0.0
48,676 + H281DRAFT_05622 0.74 -0.0
48,677 - H281DRAFT_05622 0.74 -0.8
48,677 - H281DRAFT_05622 0.74 +0.3
48,677 - H281DRAFT_05622 0.74 +0.4
48,677 - H281DRAFT_05622 0.74 -0.5
48,680 - H281DRAFT_05622 0.75 +0.6
48,779 + H281DRAFT_05622 0.82 +0.1
48,817 + H281DRAFT_05622 0.85 +0.1
48,817 + H281DRAFT_05622 0.85 +0.1
48,965 - +1.2
49,023 - +0.1
49,023 - +0.1
49,285 + H281DRAFT_05623 0.18 +0.7
49,285 + H281DRAFT_05623 0.18 +1.0
49,285 + H281DRAFT_05623 0.18 +0.8
49,285 + H281DRAFT_05623 0.18 -1.4
49,286 - H281DRAFT_05623 0.18 +0.7
49,286 - H281DRAFT_05623 0.18 +0.7
49,286 - H281DRAFT_05623 0.18 -0.0
49,286 - H281DRAFT_05623 0.18 +1.8
49,298 + H281DRAFT_05623 0.19 +0.1
49,299 - H281DRAFT_05623 0.19 +0.2
49,299 - H281DRAFT_05623 0.19 +0.3
49,391 + H281DRAFT_05623 0.26 +2.1
49,479 + H281DRAFT_05623 0.33 +1.6
49,480 - H281DRAFT_05623 0.33 +0.6
49,482 - H281DRAFT_05623 0.33 +0.3
49,482 - H281DRAFT_05623 0.33 +0.4
49,518 - H281DRAFT_05623 0.36 +1.8
49,563 - H281DRAFT_05623 0.40 +0.8
49,718 + H281DRAFT_05623 0.52 +0.3
49,718 + H281DRAFT_05623 0.52 -0.2
49,751 + H281DRAFT_05623 0.55 +0.4
49,751 + H281DRAFT_05623 0.55 +1.0
49,751 + H281DRAFT_05623 0.55 +0.1
49,751 + H281DRAFT_05623 0.55 +0.1
49,751 + H281DRAFT_05623 0.55 -1.3
49,752 - H281DRAFT_05623 0.55 -0.6
49,805 + H281DRAFT_05623 0.59 -1.5
49,805 + H281DRAFT_05623 0.59 -0.1
49,805 + H281DRAFT_05623 0.59 +0.5
49,806 - H281DRAFT_05623 0.59 +0.1
49,839 - H281DRAFT_05623 0.62 -0.3
50,216 + -1.1
50,264 + +0.0
50,374 + +0.1
50,374 + +0.1
50,375 - -0.1
50,508 + +0.6
50,509 - -1.2
50,556 + +0.6
50,556 + +0.3
50,557 - -0.2
50,563 + -0.2
50,564 - -0.3
50,564 - -0.4
50,564 - +0.3
50,564 - +1.1
50,564 - -0.5
50,564 - -0.2
50,566 + +0.1
50,566 + -0.1
50,586 - +0.5
50,598 + -0.2
50,599 - +0.7
50,599 - +0.6
50,599 - -0.1
50,599 - +0.4
50,667 + -1.2
51,079 + H281DRAFT_05624 0.43 -0.2
51,080 - H281DRAFT_05624 0.43 +0.0
51,099 + H281DRAFT_05624 0.46 +1.6
51,117 + H281DRAFT_05624 0.47 +0.2
51,117 + H281DRAFT_05624 0.47 -0.3
51,118 - H281DRAFT_05624 0.48 +0.6
51,200 + H281DRAFT_05624 0.56 +0.6
51,200 + H281DRAFT_05624 0.56 -0.2
51,201 - H281DRAFT_05624 0.56 +0.6
51,201 - H281DRAFT_05624 0.56 +0.3
51,204 + H281DRAFT_05624 0.57 +0.1
51,205 - H281DRAFT_05624 0.57 +0.2
51,230 + H281DRAFT_05624 0.59 +1.3
51,244 - H281DRAFT_05624 0.61 -0.6

Or see this region's nucleotide sequence