Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04723

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04721 and H281DRAFT_04722 are separated by 10 nucleotidesH281DRAFT_04722 and H281DRAFT_04723 are separated by 157 nucleotidesH281DRAFT_04723 and H281DRAFT_04724 are separated by 59 nucleotides H281DRAFT_04721: H281DRAFT_04721 - Cell division and transport-associated protein TolR, at 134,045 to 134,491 _04721 H281DRAFT_04722: H281DRAFT_04722 - Cell division and transport-associated protein TolQ, at 134,502 to 135,179 _04722 H281DRAFT_04723: H281DRAFT_04723 - (3S)-malyl-CoA thioesterase, at 135,337 to 135,816 _04723 H281DRAFT_04724: H281DRAFT_04724 - 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 135,876 to 136,622 _04724 Position (kb) 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 134.415 kb on + strand, within H281DRAFT_04721at 134.504 kb on - strandat 134.596 kb on + strand, within H281DRAFT_04722at 134.596 kb on + strand, within H281DRAFT_04722at 134.596 kb on + strand, within H281DRAFT_04722at 134.597 kb on - strandat 134.597 kb on - strand, within H281DRAFT_04722at 134.597 kb on - strandat 134.597 kb on - strand, within H281DRAFT_04722at 134.753 kb on + strand, within H281DRAFT_04722at 134.754 kb on - strand, within H281DRAFT_04722at 134.755 kb on + strand, within H281DRAFT_04722at 134.756 kb on - strand, within H281DRAFT_04722at 134.975 kb on - strandat 134.975 kb on - strandat 135.170 kb on + strandat 135.171 kb on - strandat 135.192 kb on + strandat 135.436 kb on - strand, within H281DRAFT_04723at 135.610 kb on - strand, within H281DRAFT_04723at 135.701 kb on + strand, within H281DRAFT_04723at 135.744 kb on - strand, within H281DRAFT_04723at 135.744 kb on - strand, within H281DRAFT_04723at 135.744 kb on - strand, within H281DRAFT_04723at 135.746 kb on + strand, within H281DRAFT_04723at 135.747 kb on - strand, within H281DRAFT_04723at 135.801 kb on + strandat 135.801 kb on + strandat 135.802 kb on - strandat 135.802 kb on - strandat 135.973 kb on + strand, within H281DRAFT_04724at 135.989 kb on + strand, within H281DRAFT_04724at 136.060 kb on - strand, within H281DRAFT_04724at 136.060 kb on - strand, within H281DRAFT_04724at 136.184 kb on - strand, within H281DRAFT_04724at 136.201 kb on + strand, within H281DRAFT_04724at 136.201 kb on + strand, within H281DRAFT_04724at 136.238 kb on + strand, within H281DRAFT_04724at 136.238 kb on + strand, within H281DRAFT_04724at 136.239 kb on - strand, within H281DRAFT_04724at 136.471 kb on + strand, within H281DRAFT_04724at 136.472 kb on - strand, within H281DRAFT_04724at 136.624 kb on - strandat 136.624 kb on - strandat 136.641 kb on - strandat 136.641 kb on - strandat 136.641 kb on - strandat 136.663 kb on - strandat 136.690 kb on + strandat 136.691 kb on - strandat 136.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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134,415 + H281DRAFT_04721 0.83 +0.3
134,504 - +0.9
134,596 + H281DRAFT_04722 0.14 -2.4
134,596 + H281DRAFT_04722 0.14 -1.6
134,596 + H281DRAFT_04722 0.14 -3.1
134,597 - -1.0
134,597 - H281DRAFT_04722 0.14 -2.2
134,597 - -1.6
134,597 - H281DRAFT_04722 0.14 -2.0
134,753 + H281DRAFT_04722 0.37 -2.7
134,754 - H281DRAFT_04722 0.37 -1.0
134,755 + H281DRAFT_04722 0.37 -2.1
134,756 - H281DRAFT_04722 0.37 -0.4
134,975 - -1.9
134,975 - +1.6
135,170 + -1.4
135,171 - -2.0
135,192 + -0.6
135,436 - H281DRAFT_04723 0.21 +0.8
135,610 - H281DRAFT_04723 0.57 +0.4
135,701 + H281DRAFT_04723 0.76 -0.0
135,744 - H281DRAFT_04723 0.85 -0.5
135,744 - H281DRAFT_04723 0.85 +0.7
135,744 - H281DRAFT_04723 0.85 -0.0
135,746 + H281DRAFT_04723 0.85 -0.3
135,747 - H281DRAFT_04723 0.85 +0.8
135,801 + -0.5
135,801 + -0.7
135,802 - +0.3
135,802 - -0.4
135,973 + H281DRAFT_04724 0.13 +0.1
135,989 + H281DRAFT_04724 0.15 +0.1
136,060 - H281DRAFT_04724 0.25 -0.3
136,060 - H281DRAFT_04724 0.25 +0.3
136,184 - H281DRAFT_04724 0.41 -0.0
136,201 + H281DRAFT_04724 0.44 +0.5
136,201 + H281DRAFT_04724 0.44 +0.3
136,238 + H281DRAFT_04724 0.48 +0.1
136,238 + H281DRAFT_04724 0.48 +0.1
136,239 - H281DRAFT_04724 0.49 +0.7
136,471 + H281DRAFT_04724 0.80 -0.5
136,472 - H281DRAFT_04724 0.80 +0.6
136,624 - -0.4
136,624 - -0.3
136,641 - +0.8
136,641 - +1.1
136,641 - -1.0
136,663 - +0.4
136,690 + -0.0
136,691 - -0.2
136,691 - -0.8

Or see this region's nucleotide sequence