Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03858 and H281DRAFT_03859 are separated by 219 nucleotides H281DRAFT_03859 and H281DRAFT_03860 are separated by 581 nucleotides
H281DRAFT_03858: H281DRAFT_03858 - DNA-binding transcriptional regulator, LysR family, at 387,346 to 388,260
_03858
H281DRAFT_03859: H281DRAFT_03859 - hypothetical protein, at 388,480 to 389,343
_03859
H281DRAFT_03860: H281DRAFT_03860 - hypothetical protein, at 389,925 to 390,149
_03860
Position (kb) 388
389
390 Strain fitness (log2 ratio) -1
0
1
2 at 387.566 kb on - strand, within H281DRAFT_03858 at 387.622 kb on - strand, within H281DRAFT_03858 at 387.989 kb on + strand, within H281DRAFT_03858 at 387.990 kb on - strand, within H281DRAFT_03858 at 388.106 kb on + strand, within H281DRAFT_03858 at 388.106 kb on + strand, within H281DRAFT_03858 at 388.107 kb on - strand, within H281DRAFT_03858 at 388.190 kb on + strand at 388.207 kb on - strand at 388.207 kb on - strand at 388.233 kb on + strand at 388.343 kb on + strand at 388.343 kb on + strand at 388.371 kb on - strand at 388.472 kb on + strand at 388.539 kb on - strand at 388.556 kb on + strand at 388.556 kb on + strand at 388.557 kb on - strand at 388.878 kb on - strand, within H281DRAFT_03859 at 388.878 kb on - strand, within H281DRAFT_03859 at 388.907 kb on + strand, within H281DRAFT_03859 at 388.907 kb on + strand, within H281DRAFT_03859 at 388.908 kb on - strand, within H281DRAFT_03859 at 389.317 kb on + strand at 389.318 kb on - strand at 389.318 kb on - strand at 389.350 kb on - strand at 389.353 kb on + strand at 389.353 kb on + strand at 389.400 kb on - strand at 389.553 kb on + strand at 389.554 kb on - strand at 389.669 kb on - strand at 389.692 kb on + strand at 389.692 kb on + strand at 389.692 kb on + strand at 389.753 kb on + strand at 389.753 kb on + strand at 389.753 kb on + strand at 389.753 kb on + strand at 389.754 kb on - strand at 389.754 kb on - strand at 389.754 kb on - strand at 389.777 kb on - strand at 389.829 kb on + strand at 389.829 kb on + strand at 389.830 kb on - strand at 389.830 kb on - strand at 389.830 kb on - strand at 389.836 kb on - strand at 389.916 kb on - strand at 390.020 kb on - strand, within H281DRAFT_03860 at 390.077 kb on + strand, within H281DRAFT_03860 at 390.078 kb on - strand, within H281DRAFT_03860 at 390.125 kb on - strand, within H281DRAFT_03860 at 390.153 kb on - strand at 390.159 kb on + strand at 390.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 387,566 - H281DRAFT_03858 0.24 -0.3 387,622 - H281DRAFT_03858 0.30 +2.1 387,989 + H281DRAFT_03858 0.70 -0.3 387,990 - H281DRAFT_03858 0.70 +0.6 388,106 + H281DRAFT_03858 0.83 +2.7 388,106 + H281DRAFT_03858 0.83 +0.7 388,107 - H281DRAFT_03858 0.83 +0.4 388,190 + +0.3 388,207 - +0.2 388,207 - +0.0 388,233 + +0.4 388,343 + -0.8 388,343 + +0.3 388,371 - +1.5 388,472 + -0.0 388,539 - +0.1 388,556 + +0.1 388,556 + +0.7 388,557 - +0.4 388,878 - H281DRAFT_03859 0.46 +0.2 388,878 - H281DRAFT_03859 0.46 +0.4 388,907 + H281DRAFT_03859 0.49 +1.2 388,907 + H281DRAFT_03859 0.49 -0.7 388,908 - H281DRAFT_03859 0.50 -0.6 389,317 + -0.3 389,318 - -0.1 389,318 - +0.2 389,350 - +1.0 389,353 + +0.3 389,353 + +1.1 389,400 - +0.0 389,553 + -0.1 389,554 - +0.1 389,669 - -0.7 389,692 + +0.5 389,692 + +0.2 389,692 + +0.7 389,753 + -1.1 389,753 + +0.1 389,753 + -0.1 389,753 + +1.1 389,754 - +0.5 389,754 - -0.0 389,754 - +0.7 389,777 - +0.1 389,829 + +0.2 389,829 + -0.0 389,830 - -0.4 389,830 - +0.4 389,830 - +0.4 389,836 - +0.5 389,916 - -0.2 390,020 - H281DRAFT_03860 0.42 +0.0 390,077 + H281DRAFT_03860 0.68 -1.0 390,078 - H281DRAFT_03860 0.68 +0.4 390,125 - H281DRAFT_03860 0.89 -0.1 390,153 - +0.4 390,159 + -0.1 390,261 - -0.6
Or see this region's nucleotide sequence