Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02111

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02110 and H281DRAFT_02111 are separated by 123 nucleotidesH281DRAFT_02111 and H281DRAFT_02112 are separated by 207 nucleotides H281DRAFT_02110: H281DRAFT_02110 - methylmalonyl-CoA mutase, at 235,224 to 238,622 _02110 H281DRAFT_02111: H281DRAFT_02111 - transcriptional regulator, LysR family, at 238,746 to 239,681 _02111 H281DRAFT_02112: H281DRAFT_02112 - Outer membrane protein (porin), at 239,889 to 240,974 _02112 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 237.867 kb on - strand, within H281DRAFT_02110at 237.932 kb on + strand, within H281DRAFT_02110at 237.932 kb on + strand, within H281DRAFT_02110at 237.933 kb on - strand, within H281DRAFT_02110at 237.967 kb on - strand, within H281DRAFT_02110at 238.252 kb on + strand, within H281DRAFT_02110at 238.252 kb on + strand, within H281DRAFT_02110at 238.363 kb on + strandat 238.384 kb on + strandat 238.461 kb on + strandat 238.461 kb on + strandat 238.462 kb on - strandat 238.673 kb on + strandat 238.675 kb on + strandat 238.747 kb on + strandat 238.748 kb on - strandat 238.748 kb on - strandat 238.748 kb on - strandat 239.102 kb on - strand, within H281DRAFT_02111at 239.102 kb on - strand, within H281DRAFT_02111at 239.164 kb on + strand, within H281DRAFT_02111at 239.329 kb on + strand, within H281DRAFT_02111at 239.485 kb on + strand, within H281DRAFT_02111at 239.489 kb on - strand, within H281DRAFT_02111at 239.489 kb on - strand, within H281DRAFT_02111at 239.698 kb on - strandat 239.728 kb on + strandat 239.877 kb on - strandat 239.918 kb on - strandat 239.921 kb on + strandat 239.922 kb on - strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.953 kb on + strandat 239.954 kb on - strandat 239.954 kb on - strandat 239.954 kb on - strandat 239.969 kb on - strandat 240.002 kb on - strand, within H281DRAFT_02112at 240.055 kb on + strand, within H281DRAFT_02112at 240.061 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.157 kb on + strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.158 kb on - strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.163 kb on + strand, within H281DRAFT_02112at 240.164 kb on - strand, within H281DRAFT_02112at 240.164 kb on - strand, within H281DRAFT_02112at 240.185 kb on - strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.295 kb on + strand, within H281DRAFT_02112at 240.296 kb on - strand, within H281DRAFT_02112at 240.296 kb on - strand, within H281DRAFT_02112at 240.301 kb on + strand, within H281DRAFT_02112at 240.334 kb on + strand, within H281DRAFT_02112at 240.335 kb on - strand, within H281DRAFT_02112at 240.335 kb on - strand, within H281DRAFT_02112at 240.391 kb on + strand, within H281DRAFT_02112at 240.391 kb on + strand, within H281DRAFT_02112at 240.391 kb on + strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.392 kb on - strand, within H281DRAFT_02112at 240.433 kb on + strand, within H281DRAFT_02112at 240.446 kb on + strand, within H281DRAFT_02112at 240.469 kb on - strand, within H281DRAFT_02112at 240.487 kb on + strand, within H281DRAFT_02112at 240.487 kb on + strand, within H281DRAFT_02112at 240.514 kb on + strand, within H281DRAFT_02112at 240.514 kb on + strand, within H281DRAFT_02112at 240.514 kb on + strand, within H281DRAFT_02112at 240.515 kb on - strand, within H281DRAFT_02112at 240.523 kb on + strand, within H281DRAFT_02112at 240.523 kb on + strand, within H281DRAFT_02112at 240.524 kb on - strand, within H281DRAFT_02112at 240.544 kb on + strand, within H281DRAFT_02112at 240.544 kb on + strand, within H281DRAFT_02112at 240.544 kb on + strand, within H281DRAFT_02112at 240.545 kb on - strand, within H281DRAFT_02112at 240.545 kb on - strand, within H281DRAFT_02112at 240.643 kb on + strand, within H281DRAFT_02112

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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237,867 - H281DRAFT_02110 0.78 -0.2
237,932 + H281DRAFT_02110 0.80 -0.5
237,932 + H281DRAFT_02110 0.80 +0.5
237,933 - H281DRAFT_02110 0.80 -0.2
237,967 - H281DRAFT_02110 0.81 -0.3
238,252 + H281DRAFT_02110 0.89 +4.3
238,252 + H281DRAFT_02110 0.89 +1.2
238,363 + +2.1
238,384 + -0.2
238,461 + +0.1
238,461 + +0.1
238,462 - -0.5
238,673 + -3.4
238,675 + +0.6
238,747 + -0.2
238,748 - +1.7
238,748 - -0.1
238,748 - -0.3
239,102 - H281DRAFT_02111 0.38 -0.4
239,102 - H281DRAFT_02111 0.38 +0.3
239,164 + H281DRAFT_02111 0.45 -0.5
239,329 + H281DRAFT_02111 0.62 -0.1
239,485 + H281DRAFT_02111 0.79 -1.6
239,489 - H281DRAFT_02111 0.79 -0.8
239,489 - H281DRAFT_02111 0.79 -0.4
239,698 - +1.6
239,728 + +0.1
239,877 - -0.4
239,918 - +0.9
239,921 + -0.2
239,922 - -0.2
239,953 + -0.4
239,953 + -0.0
239,953 + +0.2
239,953 + -0.5
239,953 + +1.9
239,953 + -0.2
239,954 - -0.2
239,954 - -0.0
239,954 - -2.1
239,969 - +1.9
240,002 - H281DRAFT_02112 0.10 +0.2
240,055 + H281DRAFT_02112 0.15 -1.8
240,061 + H281DRAFT_02112 0.16 +0.0
240,157 + H281DRAFT_02112 0.25 -0.7
240,157 + H281DRAFT_02112 0.25 -1.0
240,157 + H281DRAFT_02112 0.25 +1.1
240,157 + H281DRAFT_02112 0.25 -0.2
240,157 + H281DRAFT_02112 0.25 -0.4
240,158 - H281DRAFT_02112 0.25 -1.1
240,158 - H281DRAFT_02112 0.25 -0.3
240,158 - H281DRAFT_02112 0.25 -0.2
240,158 - H281DRAFT_02112 0.25 +0.4
240,163 + H281DRAFT_02112 0.25 +0.4
240,163 + H281DRAFT_02112 0.25 -0.0
240,163 + H281DRAFT_02112 0.25 -2.5
240,163 + H281DRAFT_02112 0.25 -0.0
240,164 - H281DRAFT_02112 0.25 +0.1
240,164 - H281DRAFT_02112 0.25 -0.8
240,185 - H281DRAFT_02112 0.27 +0.4
240,295 + H281DRAFT_02112 0.37 -0.4
240,295 + H281DRAFT_02112 0.37 -0.3
240,295 + H281DRAFT_02112 0.37 +0.1
240,295 + H281DRAFT_02112 0.37 -0.2
240,295 + H281DRAFT_02112 0.37 +1.3
240,296 - H281DRAFT_02112 0.37 -0.2
240,296 - H281DRAFT_02112 0.37 -0.3
240,301 + H281DRAFT_02112 0.38 +0.3
240,334 + H281DRAFT_02112 0.41 -0.3
240,335 - H281DRAFT_02112 0.41 +0.1
240,335 - H281DRAFT_02112 0.41 +0.2
240,391 + H281DRAFT_02112 0.46 +0.7
240,391 + H281DRAFT_02112 0.46 +0.8
240,391 + H281DRAFT_02112 0.46 +0.2
240,392 - H281DRAFT_02112 0.46 +0.2
240,392 - H281DRAFT_02112 0.46 -1.2
240,392 - H281DRAFT_02112 0.46 -0.4
240,392 - H281DRAFT_02112 0.46 -0.1
240,392 - H281DRAFT_02112 0.46 -0.4
240,433 + H281DRAFT_02112 0.50 +0.1
240,446 + H281DRAFT_02112 0.51 +0.0
240,469 - H281DRAFT_02112 0.53 -0.0
240,487 + H281DRAFT_02112 0.55 +0.0
240,487 + H281DRAFT_02112 0.55 +0.2
240,514 + H281DRAFT_02112 0.58 +1.5
240,514 + H281DRAFT_02112 0.58 -0.7
240,514 + H281DRAFT_02112 0.58 -0.0
240,515 - H281DRAFT_02112 0.58 +0.2
240,523 + H281DRAFT_02112 0.58 -0.3
240,523 + H281DRAFT_02112 0.58 -0.4
240,524 - H281DRAFT_02112 0.58 -0.7
240,544 + H281DRAFT_02112 0.60 -1.1
240,544 + H281DRAFT_02112 0.60 +0.6
240,544 + H281DRAFT_02112 0.60 +0.5
240,545 - H281DRAFT_02112 0.60 -0.2
240,545 - H281DRAFT_02112 0.60 -0.0
240,643 + H281DRAFT_02112 0.69 -0.0

Or see this region's nucleotide sequence