Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02051 and H281DRAFT_02052 are separated by 9 nucleotides H281DRAFT_02052 and H281DRAFT_02053 overlap by 29 nucleotides H281DRAFT_02053 and H281DRAFT_02054 are separated by 12 nucleotides
H281DRAFT_02051: H281DRAFT_02051 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 174,695 to 175,672
_02051
H281DRAFT_02052: H281DRAFT_02052 - hypothetical protein, at 175,682 to 175,951
_02052
H281DRAFT_02053: H281DRAFT_02053 - D-alanine transaminase, at 175,923 to 176,873
_02053
H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115
_02054
Position (kb) 175
176 Strain fitness (log2 ratio) -1
0
1 at 174.927 kb on + strand, within H281DRAFT_02051 at 175.125 kb on + strand, within H281DRAFT_02051 at 175.126 kb on - strand, within H281DRAFT_02051 at 175.126 kb on - strand, within H281DRAFT_02051 at 175.126 kb on - strand, within H281DRAFT_02051 at 175.126 kb on - strand, within H281DRAFT_02051 at 175.126 kb on - strand, within H281DRAFT_02051 at 175.126 kb on - strand, within H281DRAFT_02051 at 175.151 kb on + strand, within H281DRAFT_02051 at 175.287 kb on + strand, within H281DRAFT_02051 at 175.287 kb on + strand, within H281DRAFT_02051 at 175.352 kb on + strand, within H281DRAFT_02051 at 175.352 kb on + strand, within H281DRAFT_02051 at 175.353 kb on - strand, within H281DRAFT_02051 at 175.353 kb on - strand, within H281DRAFT_02051 at 175.353 kb on - strand, within H281DRAFT_02051 at 175.493 kb on + strand, within H281DRAFT_02051 at 175.493 kb on + strand, within H281DRAFT_02051 at 175.494 kb on - strand, within H281DRAFT_02051 at 175.494 kb on - strand, within H281DRAFT_02051 at 175.496 kb on + strand, within H281DRAFT_02051 at 175.496 kb on + strand, within H281DRAFT_02051 at 175.497 kb on - strand, within H281DRAFT_02051 at 175.497 kb on - strand, within H281DRAFT_02051 at 175.782 kb on + strand, within H281DRAFT_02052 at 175.920 kb on + strand, within H281DRAFT_02052 at 175.928 kb on + strand at 175.929 kb on - strand at 175.996 kb on + strand at 175.997 kb on - strand at 175.997 kb on - strand at 175.997 kb on - strand at 176.005 kb on + strand at 176.006 kb on - strand at 176.241 kb on + strand, within H281DRAFT_02053 at 176.241 kb on + strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.339 kb on - strand, within H281DRAFT_02053 at 176.339 kb on - strand, within H281DRAFT_02053 at 176.548 kb on + strand, within H281DRAFT_02053 at 176.549 kb on - strand, within H281DRAFT_02053 at 176.734 kb on + strand, within H281DRAFT_02053 at 176.735 kb on - strand, within H281DRAFT_02053 at 176.736 kb on + strand, within H281DRAFT_02053 at 176.737 kb on - strand, within H281DRAFT_02053 at 176.752 kb on + strand, within H281DRAFT_02053 at 176.753 kb on - strand, within H281DRAFT_02053 at 176.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 174,927 + H281DRAFT_02051 0.24 +0.8 175,125 + H281DRAFT_02051 0.44 +0.8 175,126 - H281DRAFT_02051 0.44 +0.5 175,126 - H281DRAFT_02051 0.44 +0.0 175,126 - H281DRAFT_02051 0.44 -0.3 175,126 - H281DRAFT_02051 0.44 -0.2 175,126 - H281DRAFT_02051 0.44 +0.3 175,126 - H281DRAFT_02051 0.44 -0.0 175,151 + H281DRAFT_02051 0.47 -0.3 175,287 + H281DRAFT_02051 0.61 -0.3 175,287 + H281DRAFT_02051 0.61 -0.0 175,352 + H281DRAFT_02051 0.67 -0.4 175,352 + H281DRAFT_02051 0.67 +0.2 175,353 - H281DRAFT_02051 0.67 +0.3 175,353 - H281DRAFT_02051 0.67 +0.5 175,353 - H281DRAFT_02051 0.67 -0.4 175,493 + H281DRAFT_02051 0.82 +0.2 175,493 + H281DRAFT_02051 0.82 -0.6 175,494 - H281DRAFT_02051 0.82 -0.1 175,494 - H281DRAFT_02051 0.82 -0.0 175,496 + H281DRAFT_02051 0.82 -0.3 175,496 + H281DRAFT_02051 0.82 -0.5 175,497 - H281DRAFT_02051 0.82 +0.0 175,497 - H281DRAFT_02051 0.82 -0.0 175,782 + H281DRAFT_02052 0.37 -0.5 175,920 + H281DRAFT_02052 0.88 +0.9 175,928 + +0.4 175,929 - +0.3 175,996 + +1.1 175,997 - +1.4 175,997 - +0.5 175,997 - +0.4 176,005 + -0.3 176,006 - +0.2 176,241 + H281DRAFT_02053 0.33 -0.3 176,241 + H281DRAFT_02053 0.33 -1.7 176,242 - H281DRAFT_02053 0.34 +0.4 176,242 - H281DRAFT_02053 0.34 -0.5 176,242 - H281DRAFT_02053 0.34 -0.3 176,242 - H281DRAFT_02053 0.34 +0.3 176,339 - H281DRAFT_02053 0.44 +0.2 176,339 - H281DRAFT_02053 0.44 -0.5 176,548 + H281DRAFT_02053 0.66 -0.4 176,549 - H281DRAFT_02053 0.66 -0.2 176,734 + H281DRAFT_02053 0.85 -0.5 176,735 - H281DRAFT_02053 0.85 -0.3 176,736 + H281DRAFT_02053 0.85 -0.7 176,737 - H281DRAFT_02053 0.86 +0.3 176,752 + H281DRAFT_02053 0.87 +0.4 176,753 - H281DRAFT_02053 0.87 -0.7 176,834 - -0.5
Or see this region's nucleotide sequence