Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01172

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01171 and H281DRAFT_01172 are separated by 220 nucleotidesH281DRAFT_01172 and H281DRAFT_01173 are separated by 655 nucleotides H281DRAFT_01171: H281DRAFT_01171 - alcohol dehydrogenase, propanol-preferring, at 3,886 to 4,956 _01171 H281DRAFT_01172: H281DRAFT_01172 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 5,177 to 5,965 _01172 H281DRAFT_01173: H281DRAFT_01173 - Outer membrane protein (porin), at 6,621 to 7,811 _01173 Position (kb) 5 6Strain fitness (log2 ratio) -1 0 1at 4.347 kb on + strand, within H281DRAFT_01171at 4.613 kb on - strand, within H281DRAFT_01171at 4.971 kb on + strandat 4.971 kb on + strandat 4.972 kb on - strandat 4.976 kb on - strandat 5.037 kb on + strandat 5.038 kb on - strandat 5.294 kb on - strand, within H281DRAFT_01172at 6.678 kb on + strandat 6.679 kb on - strandat 6.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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4,347 + H281DRAFT_01171 0.43 -0.4
4,613 - H281DRAFT_01171 0.68 -0.0
4,971 + -0.2
4,971 + -0.3
4,972 - +1.4
4,976 - +1.1
5,037 + -0.6
5,038 - +0.6
5,294 - H281DRAFT_01172 0.15 +1.1
6,678 + +0.4
6,679 - -0.2
6,681 + +0.7

Or see this region's nucleotide sequence