Experiment: Suberic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00236 and H281DRAFT_00237 are separated by 307 nucleotides H281DRAFT_00237 and H281DRAFT_00238 are separated by 206 nucleotides H281DRAFT_00238 and H281DRAFT_00239 are separated by 70 nucleotides H281DRAFT_00239 and H281DRAFT_00240 are separated by 35 nucleotides
H281DRAFT_00236: H281DRAFT_00236 - sigma54 specific transcriptional regulator, Fis family, at 256,208 to 257,266
_00236
H281DRAFT_00237: H281DRAFT_00237 - Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family, at 257,574 to 257,891
_00237
H281DRAFT_00238: H281DRAFT_00238 - hypothetical protein, at 258,098 to 258,361
_00238
H281DRAFT_00239: H281DRAFT_00239 - hypothetical protein, at 258,432 to 258,623
_00239
H281DRAFT_00240: H281DRAFT_00240 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 258,659 to 260,059
_00240
Position (kb) 258
259 Strain fitness (log2 ratio) -1
0
1
2 at 257.121 kb on + strand, within H281DRAFT_00236 at 257.121 kb on + strand, within H281DRAFT_00236 at 257.122 kb on - strand, within H281DRAFT_00236 at 257.122 kb on - strand, within H281DRAFT_00236 at 257.343 kb on - strand at 257.343 kb on - strand at 257.390 kb on + strand at 257.390 kb on + strand at 257.390 kb on + strand at 257.390 kb on + strand at 257.390 kb on + strand at 257.391 kb on - strand at 257.402 kb on - strand at 257.402 kb on - strand at 257.457 kb on + strand at 257.556 kb on + strand at 257.557 kb on - strand at 257.696 kb on - strand, within H281DRAFT_00237 at 257.866 kb on + strand at 257.900 kb on + strand at 257.934 kb on - strand at 258.119 kb on - strand at 258.165 kb on - strand, within H281DRAFT_00238 at 258.360 kb on - strand at 258.360 kb on - strand at 258.445 kb on - strand at 258.446 kb on + strand at 258.446 kb on + strand at 258.467 kb on + strand, within H281DRAFT_00239 at 258.607 kb on - strand at 258.607 kb on - strand at 258.607 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.670 kb on - strand at 258.694 kb on + strand at 259.113 kb on - strand, within H281DRAFT_00240 at 259.340 kb on + strand, within H281DRAFT_00240 at 259.341 kb on - strand, within H281DRAFT_00240
Per-strain Table
Position Strand Gene LocusTag Fraction Suberic (C) remove 257,121 + H281DRAFT_00236 0.86 +0.9 257,121 + H281DRAFT_00236 0.86 +0.6 257,122 - H281DRAFT_00236 0.86 +1.5 257,122 - H281DRAFT_00236 0.86 +0.4 257,343 - -0.4 257,343 - +0.0 257,390 + +1.1 257,390 + +0.5 257,390 + +0.1 257,390 + -0.1 257,390 + +0.4 257,391 - +0.1 257,402 - +0.3 257,402 - +1.2 257,457 + -0.4 257,556 + +0.3 257,557 - -0.2 257,696 - H281DRAFT_00237 0.38 +1.1 257,866 + +0.0 257,900 + -1.4 257,934 - -0.8 258,119 - +0.9 258,165 - H281DRAFT_00238 0.25 -0.2 258,360 - +0.5 258,360 - -0.4 258,445 - -0.4 258,446 + +1.2 258,446 + +0.7 258,467 + H281DRAFT_00239 0.18 -0.4 258,607 - +1.1 258,607 - +1.1 258,607 - +0.2 258,670 - +1.2 258,670 - +1.5 258,670 - +0.9 258,670 - +1.4 258,670 - +1.4 258,670 - +1.5 258,694 + +0.8 259,113 - H281DRAFT_00240 0.32 +1.0 259,340 + H281DRAFT_00240 0.49 +2.3 259,341 - H281DRAFT_00240 0.49 +1.3
Or see this region's nucleotide sequence